Gene name: RPS19A
Reference locus (S288C): YOL121C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; required for assembly and maturation of pre-40 S particles; homologous to mammalian ribosomal protein S19, no bacterial homolog; mutations in human RPS19 are associated with Diamond Blackfan anemia; RPS19A has a paralog, RPS19B, that arose from the whole genome duplication
Top 10 interactors (score): RPL24A (0.999); RPP0 (0.999); RPS29B (0.999); RPL11B (0.999); RPL3 (0.999); RPL27A (0.999); RPS6A (0.999); RPS26B (0.999); RPS25B (0.999); RPS13 (0.999); RPS22A (0.999); RPL2A (0.999); RPL32 (0.999); RPS22B (0.999); RPL42A (0.999); RPL19B (0.999); RPL34A (0.999); RPL18B (0.999); RPP2A (0.999); RPL39 (0.999)
Homologues (species, bitscore): RPS19 (Homo sapiens, 147.5); Rps19 (Mus musculus, 150.2); rps19 (Danio rerio, 147.5); rps19 (Xenopus tropicalis, 151.4); RpS19a (Drosophila melanogaster, 136.3); rps-19 (Caenorhabditis elegans, 114.8); AT5G15520 (Arabidopsis thaliana, 144.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:80678-81502:- | gene-YOL121C_AKU4011 | rna-NM_001183375.1_AKU4011 | cds-NP_014520.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:46303-47127:- | gene-YOL121C_BG1 | rna-NM_001183375.1_BG1 | cds-NP_014520.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:81953-82778:- | gene-YOL121C_Bruggeman | rna-NM_001183375.1_Bruggeman | cds-NP_014520.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:81162-81986:- | gene-YOL121C_CAT1 | rna-NM_001183375.1_CAT1 | cds-NP_014520.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:75157-75981:- | gene-YOL121C_CBS1585 | rna-NM_001183375.1_CBS1585 | cds-NP_014520.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:81005-81829:- | gene-YOL121C_CBS436 | rna-NM_001183375.1_CBS436 | cds-NP_014520.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:75020-75844:- | gene-YOL121C_CBS6412 | rna-NM_001183375.1_CBS6412 | cds-NP_014520.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:81488-82312:- | gene-YOL121C_CBS6413 | rna-NM_001183375.1_CBS6413 | cds-NP_014520.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:91923-92747:- | gene-YOL121C_CENPK1137D | rna-NM_001183375.1_CENPK1137D | cds-NP_014520.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:78929-79754:- | gene-YOL121C_EthanolRed | rna-NM_001183375.1_EthanolRed | cds-NP_014520.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:80958-81783:- | gene-YOL121C_FaliES1 | rna-NM_001183375.1_FaliES1 | cds-NP_014520.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:765-1589:+ | gene-YOL121C_JAY291 | rna-NM_001183375.1_JAY291 | cds-NP_014520.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:86594-87419:- | gene-YOL121C_MUCL30387 | rna-NM_001183375.1_MUCL30387 | cds-NP_014520.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:89593-90417:- | gene-YOL121C_MUCL30388 | rna-NM_001183375.1_MUCL30388 | cds-NP_014520.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:83095-83919:- | gene-YOL121C_MUCL39482 | rna-NM_001183375.1_MUCL39482 | cds-NP_014520.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:98972-99797:- | gene-YOL121C_MUCL42920 | rna-NM_001183375.1_MUCL42920 | cds-NP_014520.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:91915-92739:- | gene-YOL121C_NCIM3186 | rna-NM_001183375.1_NCIM3186 | cds-NP_014520.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:89128-89952:- | gene-YOL121C_NCYC1407 | rna-NM_001183375.1_NCYC1407 | cds-NP_014520.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:67562-68386:- | gene-YOL121C_PE2H3 | rna-NM_001183375.1_PE2H3 | cds-NP_014520.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:84510-85334:- | gene-YOL121C_PE2H4 | rna-NM_001183375.1_PE2H4 | cds-NP_014520.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:92026-92850:- | gene-YOL121C_S288C | rna-NM_001183375.1_S288C | cds-NP_014520.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:65452-66276:- | gene-YOL121C_SA1 | rna-NM_001183375.1_SA1 | cds-NP_014520.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:80096-80921:- | gene-YOL121C_ThermosaccDry | rna-NM_001183375.1_ThermosaccDry | cds-NP_014520.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:80757-81581:- | gene-YOL121C_VR1 | rna-NM_001183375.1_VR1 | cds-NP_014520.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:79848-80672:- | gene-YOL121C_ZTW1 | rna-NM_001183375.1_ZTW1 | cds-NP_014520.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:82606-83445:- | gene-YOL121C_Sparadoxus | rna-NM_001183375.1_Sparadoxus | cds-NP_014520.1_Sparadoxus | 98.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |