Gene name: RPS18B
Reference locus (S288C): YML026C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S18 and bacterial S13; RPS18B has a paralog, RPS18A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPL28 (0.999); RPL1B (0.999); RPL5 (0.999); RPL43B (0.999); RPS24A (0.999); RPS24B (0.999); RPS9A (0.999); RPL26A (0.999); RPS19B (0.999); RPS9B (0.999); RPS28A (0.999); RPL6B (0.999); RPL2B (0.999); RPS15 (0.999); RPS14A (0.999); RPP1A (0.999); RPS11B (0.999); RPL36B (0.999); RPL31A (0.999); RPS16A (0.999)
Homologues (species, bitscore): RPS18 (Homo sapiens, 218.0); Rps18-ps3 (Mus musculus, 218.8); rps18 (Danio rerio, 219.9); rps18 (Xenopus tropicalis, 201.4); RpS18 (Drosophila melanogaster, 212.6); rps-18 (Caenorhabditis elegans, 209.5); PFL (Arabidopsis thaliana, 205.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:272581-273422:- | gene-YML026C_AKU4011 | rna-NM_001182384.1_AKU4011 | cds-NP_013686.1_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:269451-270292:+ | gene-YML026C_BG1 | rna-NM_001182384.1_BG1 | cds-NP_013686.1_BG1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:212533-213374:- | gene-YML026C_Bruggeman | rna-NM_001182384.1_Bruggeman | cds-NP_013686.1_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:215046-215887:- | gene-YML026C_CAT1 | rna-NM_001182384.1_CAT1 | cds-NP_013686.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:205530-206371:- | gene-YML026C_CBS1585 | rna-NM_001182384.1_CBS1585 | cds-NP_013686.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:211066-211907:- | gene-YML026C_CBS436 | rna-NM_001182384.1_CBS436 | cds-NP_013686.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:319267-320108:- | gene-YML026C_CBS6412 | rna-NM_001182384.1_CBS6412 | cds-NP_013686.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:204788-205629:- | gene-YML026C_CBS6413 | rna-NM_001182384.1_CBS6413 | cds-NP_013686.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:217508-218349:- | gene-YML026C_CENPK1137D | rna-NM_001182384.1_CENPK1137D | cds-NP_013686.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:205555-206396:- | gene-YML026C_EthanolRed | rna-NM_001182384.1_EthanolRed | cds-NP_013686.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:208519-209360:- | gene-YML026C_FaliES1 | rna-NM_001182384.1_FaliES1 | cds-NP_013686.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:2777-3618:+ | gene-YML026C_JAY291 | rna-NM_001182384.1_JAY291 | cds-NP_013686.1_JAY291 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:210265-211106:- | gene-YML026C_MUCL30387 | rna-NM_001182384.1_MUCL30387 | cds-NP_013686.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:214242-215083:- | gene-YML026C_MUCL30388 | rna-NM_001182384.1_MUCL30388 | cds-NP_013686.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:205816-206657:- | gene-YML026C_MUCL39482 | rna-NM_001182384.1_MUCL39482 | cds-NP_013686.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:211371-212212:- | gene-YML026C_MUCL42920 | rna-NM_001182384.1_MUCL42920 | cds-NP_013686.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:222941-223782:- | gene-YML026C_NCIM3186 | rna-NM_001182384.1_NCIM3186 | cds-NP_013686.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:205757-206598:- | gene-YML026C_NCYC1407 | rna-NM_001182384.1_NCYC1407 | cds-NP_013686.1_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:211657-212498:- | gene-YML026C_PE2H3 | rna-NM_001182384.1_PE2H3 | cds-NP_013686.1_PE2H3 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:217752-218593:- | gene-YML026C_PE2H4 | rna-NM_001182384.1_PE2H4 | cds-NP_013686.1_PE2H4 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:222987-223828:- | gene-YML026C_S288C | rna-NM_001182384.1_S288C | cds-NP_013686.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:15023-15864:+ | gene-YML026C_SA1 | rna-NM_001182384.1_SA1 | cds-NP_013686.1_SA1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:205592-206433:- | gene-YML026C_ThermosaccDry | rna-NM_001182384.1_ThermosaccDry | cds-NP_013686.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:209598-210439:- | gene-YML026C_VR1 | rna-NM_001182384.1_VR1 | cds-NP_013686.1_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:184647-185488:- | gene-YML026C_ZTW1 | rna-NM_001182384.1_ZTW1 | cds-NP_013686.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:216360-217193:- | gene-YML026C_Sparadoxus | rna-NM_001182384.1_Sparadoxus | cds-NP_013686.1_Sparadoxus | 95.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |