Gene name: RPS18A
Reference locus (S288C): YDR450W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S18 and bacterial S13; RPS18A has a paralog, RPS18B, that arose from the whole genome duplication; protein increases in abundance and relocalizes from cytoplasm to nuclear foci upon DNA replication stress
Top 10 interactors (score): RPL4A (0.999); RPL14B (0.999); RPL27A (0.999); RPL11B (0.999); RPS29B (0.999); RPL3 (0.999); RPL18B (0.999); RPL34A (0.999); RPL39 (0.999); RPL19B (0.999); RPL42A (0.999); RPS22B (0.999); RPL32 (0.999); RPL2A (0.999); RPS22A (0.999); RPS13 (0.999); RPS25B (0.999); RPS6A (0.999); RPS26B (0.999); RPL33A (0.999)
Homologues (species, bitscore): RPS18 (Homo sapiens, 218.0); Rps18-ps3 (Mus musculus, 218.8); rps18 (Danio rerio, 219.9); rps18 (Xenopus tropicalis, 201.4); RpS18 (Drosophila melanogaster, 212.6); rps-18 (Caenorhabditis elegans, 209.5); PFL (Arabidopsis thaliana, 205.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1299822-1300697:+ | gene-YDR450W_AKU4011 | rna-NM_001180758.1_AKU4011 | cds-NP_010738.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:178187-179062:+ | gene-YDR450W_BG1 | rna-NM_001180758.1_BG1 | cds-NP_010738.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1331272-1332147:+ | gene-YDR450W_Bruggeman | rna-NM_001180758.1_Bruggeman | cds-NP_010738.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1308411-1309286:+ | gene-YDR450W_CAT1 | rna-NM_001180758.1_CAT1 | cds-NP_010738.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1294128-1295003:+ | gene-YDR450W_CBS1585 | rna-NM_001180758.1_CBS1585 | cds-NP_010738.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1313508-1314383:+ | gene-YDR450W_CBS436 | rna-NM_001180758.1_CBS436 | cds-NP_010738.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1289769-1290644:+ | gene-YDR450W_CBS6412 | rna-NM_001180758.1_CBS6412 | cds-NP_010738.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1312768-1313643:+ | gene-YDR450W_CBS6413 | rna-NM_001180758.1_CBS6413 | cds-NP_010738.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1358597-1359472:+ | gene-YDR450W_CENPK1137D | rna-NM_001180758.1_CENPK1137D | cds-NP_010738.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1303190-1304065:+ | gene-YDR450W_EthanolRed | rna-NM_001180758.1_EthanolRed | cds-NP_010738.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1306743-1307618:+ | gene-YDR450W_FaliES1 | rna-NM_001180758.1_FaliES1 | cds-NP_010738.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:4996-5871:+ | gene-YDR450W_JAY291 | rna-NM_001180758.1_JAY291 | cds-NP_010738.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1313750-1314625:+ | gene-YDR450W_MUCL30387 | rna-NM_001180758.1_MUCL30387 | cds-NP_010738.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1295782-1296657:+ | gene-YDR450W_MUCL30388 | rna-NM_001180758.1_MUCL30388 | cds-NP_010738.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1285612-1286487:+ | gene-YDR450W_MUCL39482 | rna-NM_001180758.1_MUCL39482 | cds-NP_010738.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1228418-1229293:+ | gene-YDR450W_MUCL42920 | rna-NM_001180758.1_MUCL42920 | cds-NP_010738.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1359846-1360721:+ | gene-YDR450W_NCIM3186 | rna-NM_001180758.1_NCIM3186 | cds-NP_010738.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1299385-1300260:+ | gene-YDR450W_NCYC1407 | rna-NM_001180758.1_NCYC1407 | cds-NP_010738.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1310245-1311120:+ | gene-YDR450W_PE2H3 | rna-NM_001180758.1_PE2H3 | cds-NP_010738.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1315803-1316678:+ | gene-YDR450W_PE2H4 | rna-NM_001180758.1_PE2H4 | cds-NP_010738.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1359923-1360798:+ | gene-YDR450W_S288C | rna-NM_001180758.1_S288C | cds-NP_010738.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:256365-257240:- | gene-YDR450W_SA1 | rna-NM_001180758.1_SA1 | cds-NP_010738.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1310965-1311840:+ | gene-YDR450W_ThermosaccDry | rna-NM_001180758.1_ThermosaccDry | cds-NP_010738.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1326696-1327571:+ | gene-YDR450W_VR1 | rna-NM_001180758.1_VR1 | cds-NP_010738.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:353629-354504:+ | gene-YDR450W_ZTW1 | rna-NM_001180758.1_ZTW1 | cds-NP_010738.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1314053-1314894:+ | gene-YDR450W_Sparadoxus | rna-NM_001180758.1_Sparadoxus | cds-NP_010738.1_Sparadoxus | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |