Gene name: RPS17B
Reference locus (S288C): YDR447C
Gene biotype: protein_coding
Description: Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17B has a paralog, RPS17A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPS24B (0.999); RPS24A (0.999); RPS9A (0.999); RPL26A (0.999); RPS9B (0.999); RPS28A (0.999); RPL28 (0.999); RPS15 (0.999); RPS14A (0.999); RPS11B (0.999); RPL6B (0.999); RPL2B (0.999); RPS16A (0.999); RPL31A (0.999); RPS19B (0.999); RPL1B (0.999); RPL5 (0.999); RPL43B (0.999); RPL23B (0.999); RPS18B (0.999)
Homologues (species, bitscore): RPS17 (Homo sapiens, 156.8); Rps17 (Mus musculus, 156.8); zgc:114188 (Danio rerio, 157.1); rps17 (Xenopus tropicalis, 154.1); RpS17 (Drosophila melanogaster, 144.8); rps-17 (Caenorhabditis elegans, 160.6); AT2G04390 (Arabidopsis thaliana, 150.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1294733-1295457:- | gene-YDR447C_AKU4011 | rna-NM_001180755.3_AKU4011 | cds-NP_010735.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:173090-173814:- | gene-YDR447C_BG1 | rna-NM_001180755.3_BG1 | cds-NP_010735.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1326192-1326916:- | gene-YDR447C_Bruggeman | rna-NM_001180755.3_Bruggeman | cds-NP_010735.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1303327-1304051:- | gene-YDR447C_CAT1 | rna-NM_001180755.3_CAT1 | cds-NP_010735.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1289040-1289764:- | gene-YDR447C_CBS1585 | rna-NM_001180755.3_CBS1585 | cds-NP_010735.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1308409-1309133:- | gene-YDR447C_CBS436 | rna-NM_001180755.3_CBS436 | cds-NP_010735.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1284678-1285402:- | gene-YDR447C_CBS6412 | rna-NM_001180755.3_CBS6412 | cds-NP_010735.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1307679-1308403:- | gene-YDR447C_CBS6413 | rna-NM_001180755.3_CBS6413 | cds-NP_010735.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1353483-1354207:- | gene-YDR447C_CENPK1137D | rna-NM_001180755.3_CENPK1137D | cds-NP_010735.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1298103-1298827:- | gene-YDR447C_EthanolRed | rna-NM_001180755.3_EthanolRed | cds-NP_010735.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1301654-1302378:- | gene-YDR447C_FaliES1 | rna-NM_001180755.3_FaliES1 | cds-NP_010735.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:1-633:- | gene-YDR447C_JAY291 | rna-NM_001180755.3_JAY291 | cds-NP_010735.3_JAY291 | 77.7 | 77.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1308667-1309391:- | gene-YDR447C_MUCL30387 | rna-NM_001180755.3_MUCL30387 | cds-NP_010735.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1290691-1291415:- | gene-YDR447C_MUCL30388 | rna-NM_001180755.3_MUCL30388 | cds-NP_010735.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1280531-1281255:- | gene-YDR447C_MUCL39482 | rna-NM_001180755.3_MUCL39482 | cds-NP_010735.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1223329-1224053:- | gene-YDR447C_MUCL42920 | rna-NM_001180755.3_MUCL42920 | cds-NP_010735.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1354752-1355476:- | gene-YDR447C_NCIM3186 | rna-NM_001180755.3_NCIM3186 | cds-NP_010735.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1294296-1295020:- | gene-YDR447C_NCYC1407 | rna-NM_001180755.3_NCYC1407 | cds-NP_010735.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1305147-1305871:- | gene-YDR447C_PE2H3 | rna-NM_001180755.3_PE2H3 | cds-NP_010735.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1310705-1311429:- | gene-YDR447C_PE2H4 | rna-NM_001180755.3_PE2H4 | cds-NP_010735.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1354829-1355553:- | gene-YDR447C_S288C | rna-NM_001180755.3_S288C | cds-NP_010735.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:2008-2732:+ | gene-YDR447C_SA1 | rna-NM_001180755.3_SA1 | cds-NP_010735.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1305878-1306602:- | gene-YDR447C_ThermosaccDry | rna-NM_001180755.3_ThermosaccDry | cds-NP_010735.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1321615-1322339:- | gene-YDR447C_VR1 | rna-NM_001180755.3_VR1 | cds-NP_010735.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:348534-349258:- | gene-YDR447C_ZTW1 | rna-NM_001180755.3_ZTW1 | cds-NP_010735.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1308961-1309697:- | gene-YDR447C_Sparadoxus | rna-NM_001180755.3_Sparadoxus | cds-NP_010735.3_Sparadoxus | 97.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |