Gene name: RPS17A
Reference locus (S288C): YML024W
Gene biotype: protein_coding
Description: Ribosomal protein 51 (rp51) of the small (40s) subunit; homologous to mammalian ribosomal protein S17, no bacterial homolog; RPS17A has a paralog, RPS17B, that arose from the whole genome duplication
Top 10 interactors (score): RPL16A (0.999); RPS4B (0.999); RPL30 (0.999); TMA19 (0.999); RPL6A (0.999); RPS14B (0.999); RPL27B (0.999); RPL13A (0.999); RPL1A (0.999); RPL15A (0.999); RPS18A (0.999); RPL8B (0.999); RPL20A (0.999); RPS2 (0.999); RPS3 (0.999); RPL40B (0.999); RPL9B (0.999); RPL35A (0.999); RPL12A (0.999); RPL37B (0.999)
Homologues (species, bitscore): RPS17 (Homo sapiens, 156.4); Rps17 (Mus musculus, 156.8); zgc:114188 (Danio rerio, 157.1); rps17 (Xenopus tropicalis, 154.1); RpS17 (Drosophila melanogaster, 144.4); rps-17 (Caenorhabditis elegans, 160.6); AT2G04390 (Arabidopsis thaliana, 150.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:275482-276290:+ | gene-YML024W_AKU4011 | rna-NM_001182382.1_AKU4011 | cds-NP_013688.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:266583-267391:- | gene-YML024W_BG1 | rna-NM_001182382.1_BG1 | cds-NP_013688.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:215435-216243:+ | gene-YML024W_Bruggeman | rna-NM_001182382.1_Bruggeman | cds-NP_013688.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:217947-218755:+ | gene-YML024W_CAT1 | rna-NM_001182382.1_CAT1 | cds-NP_013688.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:208432-209240:+ | gene-YML024W_CBS1585 | rna-NM_001182382.1_CBS1585 | cds-NP_013688.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:213967-214775:+ | gene-YML024W_CBS436 | rna-NM_001182382.1_CBS436 | cds-NP_013688.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:322169-322977:+ | gene-YML024W_CBS6412 | rna-NM_001182382.1_CBS6412 | cds-NP_013688.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:207689-208497:+ | gene-YML024W_CBS6413 | rna-NM_001182382.1_CBS6413 | cds-NP_013688.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:220411-221219:+ | gene-YML024W_CENPK1137D | rna-NM_001182382.1_CENPK1137D | cds-NP_013688.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:208457-209264:+ | gene-YML024W_EthanolRed | rna-NM_001182382.1_EthanolRed | cds-NP_013688.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:211421-212228:+ | gene-YML024W_FaliES1 | rna-NM_001182382.1_FaliES1 | cds-NP_013688.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000237.1:1-717:- | gene-YML024W_JAY291 | rna-NM_001182382.1_JAY291 | cds-NP_013688.1_JAY291 | 77.7 | 77.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:213166-213974:+ | gene-YML024W_MUCL30387 | rna-NM_001182382.1_MUCL30387 | cds-NP_013688.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:217835-218643:+ | gene-YML024W_MUCL30388 | rna-NM_001182382.1_MUCL30388 | cds-NP_013688.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:208717-209525:+ | gene-YML024W_MUCL39482 | rna-NM_001182382.1_MUCL39482 | cds-NP_013688.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:214272-215080:+ | gene-YML024W_MUCL42920 | rna-NM_001182382.1_MUCL42920 | cds-NP_013688.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:225843-226651:+ | gene-YML024W_NCIM3186 | rna-NM_001182382.1_NCIM3186 | cds-NP_013688.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:208658-209466:+ | gene-YML024W_NCYC1407 | rna-NM_001182382.1_NCYC1407 | cds-NP_013688.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:214558-215366:+ | gene-YML024W_PE2H3 | rna-NM_001182382.1_PE2H3 | cds-NP_013688.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:220653-221461:+ | gene-YML024W_PE2H4 | rna-NM_001182382.1_PE2H4 | cds-NP_013688.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:225889-226697:+ | gene-YML024W_S288C | rna-NM_001182382.1_S288C | cds-NP_013688.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:12155-12963:- | gene-YML024W_SA1 | rna-NM_001182382.1_SA1 | cds-NP_013688.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:208494-209301:+ | gene-YML024W_ThermosaccDry | rna-NM_001182382.1_ThermosaccDry | cds-NP_013688.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:212499-213307:+ | gene-YML024W_VR1 | rna-NM_001182382.1_VR1 | cds-NP_013688.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:187548-188356:+ | gene-YML024W_ZTW1 | rna-NM_001182382.1_ZTW1 | cds-NP_013688.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:219254-220075:+ | gene-YML024W_Sparadoxus | rna-NM_001182382.1_Sparadoxus | cds-NP_013688.1_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |