Gene name: RPS16B
Reference locus (S288C): YDL083C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16B has a paralog, RPS16A, that arose from the whole genome duplication
Top 10 interactors (score): RPL11A (0.999); RPL8A (0.999); RPS1B (0.999); RPL22A (0.999); RPL25 (0.999); RPS29A (0.999); RPL7A (0.999); RPS31 (0.999); RPL10 (0.999); ASC1 (0.999); RPS23B (0.999); RPS17A (0.999); RPS20 (0.999); RPL35B (0.999); RPS25A (0.999); RPS28B (0.999); RPL42B (0.999); RPS7B (0.999); RPS30B (0.999); RPS21A (0.999)
Homologues (species, bitscore): RPS16 (Homo sapiens, 197.6); Rps16 (Mus musculus, 197.6); rps16 (Danio rerio, 199.5); rps16 (Xenopus tropicalis, 198.7); RpS16 (Drosophila melanogaster, 198.7); rps-16 (Caenorhabditis elegans, 210.7); AT2G09990 (Arabidopsis thaliana, 209.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:291539-292402:- | gene-YDL083C_AKU4011 | rna-NM_001180142.1_AKU4011 | cds-NP_010200.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:257546-258409:+ | gene-YDL083C_BG1 | rna-NM_001180142.1_BG1 | cds-NP_010200.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:309209-310072:- | gene-YDL083C_Bruggeman | rna-NM_001180142.1_Bruggeman | cds-NP_010200.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:305697-306560:- | gene-YDL083C_CAT1 | rna-NM_001180142.1_CAT1 | cds-NP_010200.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:289811-290674:- | gene-YDL083C_CBS1585 | rna-NM_001180142.1_CBS1585 | cds-NP_010200.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:306478-307341:- | gene-YDL083C_CBS436 | rna-NM_001180142.1_CBS436 | cds-NP_010200.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:288239-289102:- | gene-YDL083C_CBS6412 | rna-NM_001180142.1_CBS6412 | cds-NP_010200.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:307865-308728:- | gene-YDL083C_CBS6413 | rna-NM_001180142.1_CBS6413 | cds-NP_010200.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:305749-306612:- | gene-YDL083C_CENPK1137D | rna-NM_001180142.1_CENPK1137D | cds-NP_010200.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:302574-303437:- | gene-YDL083C_EthanolRed | rna-NM_001180142.1_EthanolRed | cds-NP_010200.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:308546-309409:- | gene-YDL083C_FaliES1 | rna-NM_001180142.1_FaliES1 | cds-NP_010200.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:78597-79460:- | gene-YDL083C_JAY291 | rna-NM_001180142.1_JAY291 | cds-NP_010200.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:306725-307588:- | gene-YDL083C_MUCL30387 | rna-NM_001180142.1_MUCL30387 | cds-NP_010200.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:297749-298612:- | gene-YDL083C_MUCL30388 | rna-NM_001180142.1_MUCL30388 | cds-NP_010200.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:290916-291779:- | gene-YDL083C_MUCL39482 | rna-NM_001180142.1_MUCL39482 | cds-NP_010200.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:212926-213789:- | gene-YDL083C_MUCL42920 | rna-NM_001180142.1_MUCL42920 | cds-NP_010200.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:306849-307712:- | gene-YDL083C_NCIM3186 | rna-NM_001180142.1_NCIM3186 | cds-NP_010200.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:290931-291794:- | gene-YDL083C_NCYC1407 | rna-NM_001180142.1_NCYC1407 | cds-NP_010200.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:297715-298578:- | gene-YDL083C_PE2H3 | rna-NM_001180142.1_PE2H3 | cds-NP_010200.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:297714-298577:- | gene-YDL083C_PE2H4 | rna-NM_001180142.1_PE2H4 | cds-NP_010200.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:306926-307789:- | gene-YDL083C_S288C | rna-NM_001180142.1_S288C | cds-NP_010200.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:127133-127996:+ | gene-YDL083C_SA1 | rna-NM_001180142.1_SA1 | cds-NP_010200.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:308057-308920:- | gene-YDL083C_ThermosaccDry | rna-NM_001180142.1_ThermosaccDry | cds-NP_010200.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:310133-310996:- | gene-YDL083C_VR1 | rna-NM_001180142.1_VR1 | cds-NP_010200.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:305971-306834:- | gene-YDL083C_ZTW1 | rna-NM_001180142.1_ZTW1 | cds-NP_010200.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:308068-308935:- | gene-YDL083C_Sparadoxus | rna-NM_001180142.1_Sparadoxus | cds-NP_010200.1_Sparadoxus | 97.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |