Gene name: RPS16A
Reference locus (S288C): YMR143W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16A has a paralog, RPS16B, that arose from the whole genome duplication
Top 10 interactors (score): RPL40A (0.999); RPS21B (0.999); RPS26B (0.999); RPL4A (0.999); RPS6A (0.999); RPL33A (0.999); RPS8B (0.999); RPS19A (0.999); RPL16B (0.999); RPL24A (0.999); RPP0 (0.999); RPL17B (0.999); RPL20B (0.999); RPS30A (0.999); RPL29 (0.999); RPL17A (0.999); RPS27A (0.999); RPL23A (0.999); RPS26A (0.999); RPS17B (0.999)
Homologues (species, bitscore): RPS16 (Homo sapiens, 197.6); Rps16 (Mus musculus, 197.6); rps16 (Danio rerio, 199.5); rps16 (Xenopus tropicalis, 198.7); RpS16 (Drosophila melanogaster, 198.7); rps-16 (Caenorhabditis elegans, 210.7); AT2G09990 (Arabidopsis thaliana, 209.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:591426-592397:+ | gene-YMR143W_AKU4011 | rna-NM_001182645.1_AKU4011 | cds-NP_013863.2_AKU4011 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:80132-81107:- | gene-YMR143W_BG1 | rna-NM_001182645.1_BG1 | cds-NP_013863.2_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:534608-535583:+ | gene-YMR143W_Bruggeman | rna-NM_001182645.1_Bruggeman | cds-NP_013863.2_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:536823-537798:+ | gene-YMR143W_CAT1 | rna-NM_001182645.1_CAT1 | cds-NP_013863.2_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:524349-525320:+ | gene-YMR143W_CBS1585 | rna-NM_001182645.1_CBS1585 | cds-NP_013863.2_CBS1585 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:528237-529212:+ | gene-YMR143W_CBS436 | rna-NM_001182645.1_CBS436 | cds-NP_013863.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:637343-638314:+ | gene-YMR143W_CBS6412 | rna-NM_001182645.1_CBS6412 | cds-NP_013863.2_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:522910-523881:+ | gene-YMR143W_CBS6413 | rna-NM_001182645.1_CBS6413 | cds-NP_013863.2_CBS6413 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:546448-547424:+ | gene-YMR143W_CENPK1137D | rna-NM_001182645.1_CENPK1137D | cds-NP_013863.2_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:522538-523514:+ | gene-YMR143W_EthanolRed | rna-NM_001182645.1_EthanolRed | cds-NP_013863.2_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:529537-530513:+ | gene-YMR143W_FaliES1 | rna-NM_001182645.1_FaliES1 | cds-NP_013863.2_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000115.1:1374-2347:+ | gene-YMR143W_JAY291 | rna-NM_001182645.1_JAY291 | cds-NP_013863.2_JAY291 | 97.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:529333-530308:+ | gene-YMR143W_MUCL30387 | rna-NM_001182645.1_MUCL30387 | cds-NP_013863.2_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:534865-535840:+ | gene-YMR143W_MUCL30388 | rna-NM_001182645.1_MUCL30388 | cds-NP_013863.2_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:525050-526021:+ | gene-YMR143W_MUCL39482 | rna-NM_001182645.1_MUCL39482 | cds-NP_013863.2_MUCL39482 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:531344-532319:+ | gene-YMR143W_MUCL42920 | rna-NM_001182645.1_MUCL42920 | cds-NP_013863.2_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:551882-552857:+ | gene-YMR143W_NCIM3186 | rna-NM_001182645.1_NCIM3186 | cds-NP_013863.2_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:524689-525660:+ | gene-YMR143W_NCYC1407 | rna-NM_001182645.1_NCYC1407 | cds-NP_013863.2_NCYC1407 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:535125-536100:+ | gene-YMR143W_PE2H3 | rna-NM_001182645.1_PE2H3 | cds-NP_013863.2_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:535585-536558:+ | gene-YMR143W_PE2H4 | rna-NM_001182645.1_PE2H4 | cds-NP_013863.2_PE2H4 | 97.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:551928-552903:+ | gene-YMR143W_S288C | rna-NM_001182645.1_S288C | cds-NP_013863.2_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:18367-19342:- | gene-YMR143W_SA1 | rna-NM_001182645.1_SA1 | cds-NP_013863.2_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:524936-525912:+ | gene-YMR143W_ThermosaccDry | rna-NM_001182645.1_ThermosaccDry | cds-NP_013863.2_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:537639-538614:+ | gene-YMR143W_VR1 | rna-NM_001182645.1_VR1 | cds-NP_013863.2_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:500080-501056:+ | gene-YMR143W_ZTW1 | rna-NM_001182645.1_ZTW1 | cds-NP_013863.2_ZTW1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:536444-537423:+ | gene-YMR143W_Sparadoxus | rna-NM_001182645.1_Sparadoxus | cds-NP_013863.2_Sparadoxus | 96.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |