Gene name: RPS15
Reference locus (S288C): YOL040C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S15 and bacterial S19
Top 10 interactors (score): RPP1A (0.999); RPS14A (0.999); RPL15B (0.999); RPL28 (0.999); RPS28A (0.999); RPL26A (0.999); RPS9B (0.999); RPS9A (0.999); EFT1 (0.999); RPS11B (0.999); RPL6B (0.999); RPL2B (0.999); RPL12B (0.999); RPL9A (0.999); RPS27B (0.999); RPS19B (0.999); RPL31A (0.999); RPS16A (0.999); FUN12 (0.999); RPL36B (0.999)
Homologues (species, bitscore): RPS15 (Homo sapiens, 181.4); Rps15 (Mus musculus, 181.4); rps15 (Danio rerio, 180.6); rps15 (Xenopus tropicalis, 181.8); RpS15 (Drosophila melanogaster, 183.0); rps-15 (Caenorhabditis elegans, 170.2); AT5G09500 (Arabidopsis thaliana, 206.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:237510-237938:- | gene-YOL040C_AKU4011 | rna-NM_001183294.1_AKU4011 | cds-NP_014602.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:53133-53561:- | gene-YOL040C_BG1 | rna-NM_001183294.1_BG1 | cds-NP_014602.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:240366-240794:- | gene-YOL040C_Bruggeman | rna-NM_001183294.1_Bruggeman | cds-NP_014602.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:238223-238651:- | gene-YOL040C_CAT1 | rna-NM_001183294.1_CAT1 | cds-NP_014602.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:232180-232608:- | gene-YOL040C_CBS1585 | rna-NM_001183294.1_CBS1585 | cds-NP_014602.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:236461-236889:- | gene-YOL040C_CBS436 | rna-NM_001183294.1_CBS436 | cds-NP_014602.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:231544-231972:- | gene-YOL040C_CBS6412 | rna-NM_001183294.1_CBS6412 | cds-NP_014602.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:239063-239491:- | gene-YOL040C_CBS6413 | rna-NM_001183294.1_CBS6413 | cds-NP_014602.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:252850-253278:- | gene-YOL040C_CENPK1137D | rna-NM_001183294.1_CENPK1137D | cds-NP_014602.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:234501-234929:- | gene-YOL040C_EthanolRed | rna-NM_001183294.1_EthanolRed | cds-NP_014602.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:237417-237845:- | gene-YOL040C_FaliES1 | rna-NM_001183294.1_FaliES1 | cds-NP_014602.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:28616-29044:+ | gene-YOL040C_JAY291 | rna-NM_001183294.1_JAY291 | cds-NP_014602.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:243388-243816:- | gene-YOL040C_MUCL30387 | rna-NM_001183294.1_MUCL30387 | cds-NP_014602.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:247739-248167:- | gene-YOL040C_MUCL30388 | rna-NM_001183294.1_MUCL30388 | cds-NP_014602.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:239665-240093:- | gene-YOL040C_MUCL39482 | rna-NM_001183294.1_MUCL39482 | cds-NP_014602.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:254600-255028:- | gene-YOL040C_MUCL42920 | rna-NM_001183294.1_MUCL42920 | cds-NP_014602.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:253038-253466:- | gene-YOL040C_NCIM3186 | rna-NM_001183294.1_NCIM3186 | cds-NP_014602.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:246409-246837:- | gene-YOL040C_NCYC1407 | rna-NM_001183294.1_NCYC1407 | cds-NP_014602.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:228827-229255:- | gene-YOL040C_PE2H3 | rna-NM_001183294.1_PE2H3 | cds-NP_014602.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:239801-240229:- | gene-YOL040C_PE2H4 | rna-NM_001183294.1_PE2H4 | cds-NP_014602.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:253149-253577:- | gene-YOL040C_S288C | rna-NM_001183294.1_S288C | cds-NP_014602.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:221149-221577:- | gene-YOL040C_SA1 | rna-NM_001183294.1_SA1 | cds-NP_014602.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:235988-236416:- | gene-YOL040C_ThermosaccDry | rna-NM_001183294.1_ThermosaccDry | cds-NP_014602.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:236052-236480:- | gene-YOL040C_VR1 | rna-NM_001183294.1_VR1 | cds-NP_014602.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:235855-236283:- | gene-YOL040C_ZTW1 | rna-NM_001183294.1_ZTW1 | cds-NP_014602.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:244269-244697:- | gene-YOL040C_Sparadoxus | rna-NM_001183294.1_Sparadoxus | cds-NP_014602.1_Sparadoxus | 97.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |