Gene name: RPS13
Reference locus (S288C): YDR064W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S13 and bacterial S15
Top 10 interactors (score): RPL22A (0.999); RPL25 (0.999); RPS1B (0.999); RPS29A (0.999); RPL43A (0.999); RPL24B (0.999); RPS0A (0.999); RPP1B (0.999); RPL21A (0.999); RPS1A (0.999); RPL18A (0.999); RPS7B (0.999); RPS25A (0.999); RPL42B (0.999); RPS28B (0.999); RPL35B (0.999); RPL7A (0.999); ASC1 (0.999); RPS31 (0.999); RPL10 (0.999)
Homologues (species, bitscore): RPS13 (Homo sapiens, 250.8); Rps13 (Mus musculus, 250.8); rps13 (Danio rerio, 247.3); rps13 (Xenopus tropicalis, 139.0); RpS13 (Drosophila melanogaster, 239.2); rps-13 (Caenorhabditis elegans, 226.5); RPS13A (Arabidopsis thaliana, 238.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:556999-557993:+ | gene-YDR064W_AKU4011 | rna-NM_001180372.3_AKU4011 | cds-NP_010349.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:567397-568391:- | gene-YDR064W_BG1 | rna-NM_001180372.3_BG1 | cds-NP_010349.3_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:589304-590298:+ | gene-YDR064W_Bruggeman | rna-NM_001180372.3_Bruggeman | cds-NP_010349.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:573444-573878:+ | gene-YDR064W_CAT1 | rna-NM_001180372.3_CAT1 | cds-NP_010349.3_CAT1 | 95.1 | 95.3 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:547955-548949:+ | gene-YDR064W_CBS1585 | rna-NM_001180372.3_CBS1585 | cds-NP_010349.3_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:573118-574112:+ | gene-YDR064W_CBS436 | rna-NM_001180372.3_CBS436 | cds-NP_010349.3_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:544367-545361:+ | gene-YDR064W_CBS6412 | rna-NM_001180372.3_CBS6412 | cds-NP_010349.3_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:573033-574027:+ | gene-YDR064W_CBS6413 | rna-NM_001180372.3_CBS6413 | cds-NP_010349.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:578423-579417:+ | gene-YDR064W_CENPK1137D | rna-NM_001180372.3_CENPK1137D | cds-NP_010349.3_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:558816-559810:+ | gene-YDR064W_EthanolRed | rna-NM_001180372.3_EthanolRed | cds-NP_010349.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:565263-566257:+ | gene-YDR064W_FaliES1 | rna-NM_001180372.3_FaliES1 | cds-NP_010349.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000358.1:64548-65542:- | gene-YDR064W_JAY291 | rna-NM_001180372.3_JAY291 | cds-NP_010349.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:573997-574991:+ | gene-YDR064W_MUCL30387 | rna-NM_001180372.3_MUCL30387 | cds-NP_010349.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:564387-565381:+ | gene-YDR064W_MUCL30388 | rna-NM_001180372.3_MUCL30388 | cds-NP_010349.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:549326-550320:+ | gene-YDR064W_MUCL39482 | rna-NM_001180372.3_MUCL39482 | cds-NP_010349.3_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:479798-480792:+ | gene-YDR064W_MUCL42920 | rna-NM_001180372.3_MUCL42920 | cds-NP_010349.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:579381-580375:+ | gene-YDR064W_NCIM3186 | rna-NM_001180372.3_NCIM3186 | cds-NP_010349.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:548258-549252:+ | gene-YDR064W_NCYC1407 | rna-NM_001180372.3_NCYC1407 | cds-NP_010349.3_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:567892-568886:+ | gene-YDR064W_PE2H3 | rna-NM_001180372.3_PE2H3 | cds-NP_010349.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:567197-568191:+ | gene-YDR064W_PE2H4 | rna-NM_001180372.3_PE2H4 | cds-NP_010349.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:579458-580452:+ | gene-YDR064W_S288C | rna-NM_001180372.3_S288C | cds-NP_010349.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:65040-66034:- | gene-YDR064W_SA1 | rna-NM_001180372.3_SA1 | cds-NP_010349.3_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:564955-565949:+ | gene-YDR064W_ThermosaccDry | rna-NM_001180372.3_ThermosaccDry | cds-NP_010349.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:577704-578682:+ | gene-YDR064W_VR1 | rna-NM_001180372.3_VR1 | cds-NP_010349.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:562606-563600:+ | gene-YDR064W_ZTW1 | rna-NM_001180372.3_ZTW1 | cds-NP_010349.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:567481-568484:+ | gene-YDR064W_Sparadoxus | rna-NM_001180372.3_Sparadoxus | cds-NP_010349.3_Sparadoxus | 97.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |