Gene name: RPS12
Reference locus (S288C): YOR369C
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S12, no bacterial homolog
Top 10 interactors (score): RPS10B (0.999); RPL15A (0.999); RPS4A (0.999); RPP2B (0.999); RPL12A (0.999); RPL37B (0.999); RPL6A (0.999); RPL1A (0.999); RPL27B (0.999); RPL13A (0.999); RPS14B (0.999); RPS18A (0.999); RPL16A (0.999); RPL8B (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPL35A (0.999); RPL9B (0.999); RPL40B (0.999)
Homologues (species, bitscore): RPS12 (Homo sapiens, 123.6); Rps12 (Mus musculus, 123.6); rps12 (Danio rerio, 120.9); rps12 (Xenopus tropicalis, 114.0); RpS12 (Drosophila melanogaster, 114.4); rps-12 (Caenorhabditis elegans, 112.5); AT1G15930 (Arabidopsis thaliana, 104.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:1014794-1015225:- | gene-YOR369C_AKU4011 | rna-NM_001183789.3_AKU4011 | cds-NP_015014.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:51955-52386:- | gene-YOR369C_BG1 | rna-NM_001183789.3_BG1 | cds-NP_015014.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:999601-1000032:- | gene-YOR369C_Bruggeman | rna-NM_001183789.3_Bruggeman | cds-NP_015014.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:1000247-1000678:- | gene-YOR369C_CAT1 | rna-NM_001183789.3_CAT1 | cds-NP_015014.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:999204-999635:- | gene-YOR369C_CBS1585 | rna-NM_001183789.3_CBS1585 | cds-NP_015014.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:994010-994441:- | gene-YOR369C_CBS436 | rna-NM_001183789.3_CBS436 | cds-NP_015014.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:228501-228932:- | gene-YOR369C_CBS6412 | rna-NM_001183789.3_CBS6412 | cds-NP_015014.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:1003477-1003908:- | gene-YOR369C_CBS6413 | rna-NM_001183789.3_CBS6413 | cds-NP_015014.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1028016-1028447:- | gene-YOR369C_CENPK1137D | rna-NM_001183789.3_CENPK1137D | cds-NP_015014.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:243513-243944:- | gene-YOR369C_EthanolRed | rna-NM_001183789.3_EthanolRed | cds-NP_015014.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:996342-996773:- | gene-YOR369C_FaliES1 | rna-NM_001183789.3_FaliES1 | cds-NP_015014.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:8903-9334:+ | gene-YOR369C_JAY291 | rna-NM_001183789.3_JAY291 | cds-NP_015014.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:1008932-1009363:- | gene-YOR369C_MUCL30387 | rna-NM_001183789.3_MUCL30387 | cds-NP_015014.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:1016954-1017385:- | gene-YOR369C_MUCL30388 | rna-NM_001183789.3_MUCL30388 | cds-NP_015014.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:1005739-1006170:- | gene-YOR369C_MUCL39482 | rna-NM_001183789.3_MUCL39482 | cds-NP_015014.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:1013351-1013782:- | gene-YOR369C_MUCL42920 | rna-NM_001183789.3_MUCL42920 | cds-NP_015014.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1028083-1028514:- | gene-YOR369C_NCIM3186 | rna-NM_001183789.3_NCIM3186 | cds-NP_015014.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:1006747-1007178:- | gene-YOR369C_NCYC1407 | rna-NM_001183789.3_NCYC1407 | cds-NP_015014.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:1002014-1002445:- | gene-YOR369C_PE2H3 | rna-NM_001183789.3_PE2H3 | cds-NP_015014.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1018365-1018796:- | gene-YOR369C_PE2H4 | rna-NM_001183789.3_PE2H4 | cds-NP_015014.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1028194-1028625:- | gene-YOR369C_S288C | rna-NM_001183789.3_S288C | cds-NP_015014.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:132728-133159:- | gene-YOR369C_SA1 | rna-NM_001183789.3_SA1 | cds-NP_015014.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:995512-995943:- | gene-YOR369C_ThermosaccDry | rna-NM_001183789.3_ThermosaccDry | cds-NP_015014.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1056996-1057427:- | gene-YOR369C_VR1 | rna-NM_001183789.3_VR1 | cds-NP_015014.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:728233-728664:- | gene-YOR369C_ZTW1 | rna-NM_001183789.3_ZTW1 | cds-NP_015014.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:1002264-1002695:- | gene-YOR369C_Sparadoxus | rna-NM_001183789.3_Sparadoxus | cds-NP_015014.3_Sparadoxus | 95.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |