Gene name: RPS11B
Reference locus (S288C): YBR048W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; RPS11B has a paralog, RPS11A, that arose from the whole genome duplication
Top 10 interactors (score): RPL20A (0.999); RPS3 (0.999); RPS2 (0.999); RPL8B (0.999); RPS18A (0.999); RPL16A (0.999); RPL15A (0.999); RPS14B (0.999); RPL1A (0.999); RPL27B (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPL12A (0.999); RPL13A (0.999); ENP1 (0.999); RPL6A (0.999); RPL4B (0.999); RPL30 (0.999); RPS4B (0.999)
Homologues (species, bitscore): RPS11 (Homo sapiens, 214.5); Rps11 (Mus musculus, 214.5); rps11 (Danio rerio, 209.5); rps11 (Xenopus tropicalis, 109.4); RpS11 (Drosophila melanogaster, 185.3); rps-11 (Caenorhabditis elegans, 188.7); AT4G30800 (Arabidopsis thaliana, 190.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:315263-316243:+ | gene-YBR048W_AKU4011 | rna-NM_001178396.1_AKU4011 | cds-NP_009604.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:305426-306407:+ | gene-YBR048W_BG1 | rna-NM_001178396.1_BG1 | cds-NP_009604.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:315995-316976:+ | gene-YBR048W_Bruggeman | rna-NM_001178396.1_Bruggeman | cds-NP_009604.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:319686-320668:+ | gene-YBR048W_CAT1 | rna-NM_001178396.1_CAT1 | cds-NP_009604.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:307560-308540:+ | gene-YBR048W_CBS1585 | rna-NM_001178396.1_CBS1585 | cds-NP_009604.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:315567-316548:+ | gene-YBR048W_CBS436 | rna-NM_001178396.1_CBS436 | cds-NP_009604.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:405777-406757:+ | gene-YBR048W_CBS6412 | rna-NM_001178396.1_CBS6412 | cds-NP_009604.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:312677-313657:+ | gene-YBR048W_CBS6413 | rna-NM_001178396.1_CBS6413 | cds-NP_009604.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:326591-327572:+ | gene-YBR048W_CENPK1137D | rna-NM_001178396.1_CENPK1137D | cds-NP_009604.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:442037-443017:+ | gene-YBR048W_EthanolRed | rna-NM_001178396.1_EthanolRed | cds-NP_009604.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:331317-332297:+ | gene-YBR048W_FaliES1 | rna-NM_001178396.1_FaliES1 | cds-NP_009604.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000441.1:1-832:- | gene-YBR048W_JAY291 | rna-NM_001178396.1_JAY291 | cds-NP_009604.1_JAY291 | 67.9 | 68.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:317621-318601:+ | gene-YBR048W_MUCL30387 | rna-NM_001178396.1_MUCL30387 | cds-NP_009604.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:317405-318385:+ | gene-YBR048W_MUCL30388 | rna-NM_001178396.1_MUCL30388 | cds-NP_009604.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:307548-308528:+ | gene-YBR048W_MUCL39482 | rna-NM_001178396.1_MUCL39482 | cds-NP_009604.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:314745-315726:+ | gene-YBR048W_MUCL42920 | rna-NM_001178396.1_MUCL42920 | cds-NP_009604.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:332628-333609:+ | gene-YBR048W_NCIM3186 | rna-NM_001178396.1_NCIM3186 | cds-NP_009604.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:308460-309440:+ | gene-YBR048W_NCYC1407 | rna-NM_001178396.1_NCYC1407 | cds-NP_009604.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:320632-321613:+ | gene-YBR048W_PE2H3 | rna-NM_001178396.1_PE2H3 | cds-NP_009604.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:318308-319289:+ | gene-YBR048W_PE2H4 | rna-NM_001178396.1_PE2H4 | cds-NP_009604.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:332831-333812:+ | gene-YBR048W_S288C | rna-NM_001178396.1_S288C | cds-NP_009604.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:143730-144711:- | gene-YBR048W_SA1 | rna-NM_001178396.1_SA1 | cds-NP_009604.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:330328-331308:+ | gene-YBR048W_ThermosaccDry | rna-NM_001178396.1_ThermosaccDry | cds-NP_009604.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:312234-313215:+ | gene-YBR048W_VR1 | rna-NM_001178396.1_VR1 | cds-NP_009604.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:306057-307037:+ | gene-YBR048W_ZTW1 | rna-NM_001178396.1_ZTW1 | cds-NP_009604.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:342587-343567:+ | gene-YBR048W_Sparadoxus | rna-NM_001178396.1_Sparadoxus | cds-NP_009604.1_Sparadoxus | 97.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |