Gene name: RPS11A
Reference locus (S288C): YDR025W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S11 and bacterial S17; N-terminally propionylated in vivo; RPS11A has a paralog, RPS11B, that arose from the whole genome duplication
Top 10 interactors (score): RPL7A (0.999); RPL35B (0.999); RPL42B (0.999); RPS28B (0.999); RPS25A (0.999); RPS7B (0.999); RPS30B (0.999); RPS17A (0.999); RPS23B (0.999); RPS20 (0.999); RPL11A (0.999); RPS21A (0.999); RPL8A (0.999); RPS1B (0.999); RPL25 (0.999); RPL22A (0.999); RPS31 (0.999); RPL10 (0.999); ASC1 (0.999); RPS29A (0.999)
Homologues (species, bitscore): RPS11 (Homo sapiens, 214.5); Rps11 (Mus musculus, 214.5); rps11 (Danio rerio, 209.5); rps11 (Xenopus tropicalis, 109.4); RpS11 (Drosophila melanogaster, 185.3); rps-11 (Caenorhabditis elegans, 188.7); AT4G30800 (Arabidopsis thaliana, 190.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:477434-478217:+ | gene-YDR025W_AKU4011 | rna-NM_001180333.3_AKU4011 | cds-NP_010308.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:71558-72367:- | gene-YDR025W_BG1 | rna-NM_001180333.3_BG1 | cds-NP_010308.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:505675-506484:+ | gene-YDR025W_Bruggeman | rna-NM_001180333.3_Bruggeman | cds-NP_010308.3_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:490751-491560:+ | gene-YDR025W_CAT1 | rna-NM_001180333.3_CAT1 | cds-NP_010308.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:474023-474806:+ | gene-YDR025W_CBS1585 | rna-NM_001180333.3_CBS1585 | cds-NP_010308.3_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:491013-491822:+ | gene-YDR025W_CBS436 | rna-NM_001180333.3_CBS436 | cds-NP_010308.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:470935-471718:+ | gene-YDR025W_CBS6412 | rna-NM_001180333.3_CBS6412 | cds-NP_010308.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:493212-493995:+ | gene-YDR025W_CBS6413 | rna-NM_001180333.3_CBS6413 | cds-NP_010308.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:490480-491289:+ | gene-YDR025W_CENPK1137D | rna-NM_001180333.3_CENPK1137D | cds-NP_010308.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:485458-486241:+ | gene-YDR025W_EthanolRed | rna-NM_001180333.3_EthanolRed | cds-NP_010308.3_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:491815-492598:+ | gene-YDR025W_FaliES1 | rna-NM_001180333.3_FaliES1 | cds-NP_010308.3_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000042.1:20964-21773:- | gene-YDR025W_JAY291 | rna-NM_001180333.3_JAY291 | cds-NP_010308.3_JAY291 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:491259-492068:+ | gene-YDR025W_MUCL30387 | rna-NM_001180333.3_MUCL30387 | cds-NP_010308.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:481720-482529:+ | gene-YDR025W_MUCL30388 | rna-NM_001180333.3_MUCL30388 | cds-NP_010308.3_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:475391-476174:+ | gene-YDR025W_MUCL39482 | rna-NM_001180333.3_MUCL39482 | cds-NP_010308.3_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:397049-397858:+ | gene-YDR025W_MUCL42920 | rna-NM_001180333.3_MUCL42920 | cds-NP_010308.3_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:491438-492247:+ | gene-YDR025W_NCIM3186 | rna-NM_001180333.3_NCIM3186 | cds-NP_010308.3_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:474824-475607:+ | gene-YDR025W_NCYC1407 | rna-NM_001180333.3_NCYC1407 | cds-NP_010308.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:489919-490728:+ | gene-YDR025W_PE2H3 | rna-NM_001180333.3_PE2H3 | cds-NP_010308.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:489224-490033:+ | gene-YDR025W_PE2H4 | rna-NM_001180333.3_PE2H4 | cds-NP_010308.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:491515-492324:+ | gene-YDR025W_S288C | rna-NM_001180333.3_S288C | cds-NP_010308.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:18684-19493:+ | gene-YDR025W_SA1 | rna-NM_001180333.3_SA1 | cds-NP_010308.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:491293-492076:+ | gene-YDR025W_ThermosaccDry | rna-NM_001180333.3_ThermosaccDry | cds-NP_010308.3_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:495858-496667:+ | gene-YDR025W_VR1 | rna-NM_001180333.3_VR1 | cds-NP_010308.3_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:489189-489972:+ | gene-YDR025W_ZTW1 | rna-NM_001180333.3_ZTW1 | cds-NP_010308.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:493629-494451:+ | gene-YDR025W_Sparadoxus | rna-NM_001180333.3_Sparadoxus | cds-NP_010308.3_Sparadoxus | 95.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |