Gene name: RPS10B
Reference locus (S288C): YMR230W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10B has a paralog, RPS10A, that arose from the whole genome duplication; mutations in the human homolog associated with Diamond-Blackfan anemia
Top 10 interactors (score): RPS17B (0.999); RPS21B (0.999); RPL30 (0.999); RPL40B (0.999); RPL35A (0.999); RPS2 (0.999); RPS3 (0.999); RPS18A (0.999); RPS14B (0.999); RPL27B (0.999); RPL13A (0.999); RPS4A (0.999); RPS23A (0.999); RPS4B (0.999); RPS12 (0.999); RPS10A (0.999); RPS11A (0.999); RPS8A (0.999); RPL33B (0.999); RPS16B (0.999)
Homologues (species, bitscore): RPS10 (Homo sapiens, 118.2); Rps10 (Mus musculus, 118.2); rps10 (Danio rerio, 114.8); rps10 (Xenopus tropicalis, 118.2); RpS10b (Drosophila melanogaster, 114.4); rps-10 (Caenorhabditis elegans, 101.3); AT5G52650 (Arabidopsis thaliana, 115.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:772320-773047:+ | gene-YMR230W_AKU4011 | rna-NM_001182737.1_AKU4011 | cds-NP_013957.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:181543-182270:- | gene-YMR230W_BG1 | rna-NM_001182737.1_BG1 | cds-NP_013957.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:716547-717274:+ | gene-YMR230W_Bruggeman | rna-NM_001182737.1_Bruggeman | cds-NP_013957.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:720440-721167:+ | gene-YMR230W_CAT1 | rna-NM_001182737.1_CAT1 | cds-NP_013957.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:704580-705307:+ | gene-YMR230W_CBS1585 | rna-NM_001182737.1_CBS1585 | cds-NP_013957.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:708849-709576:+ | gene-YMR230W_CBS436 | rna-NM_001182737.1_CBS436 | cds-NP_013957.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:816142-816869:+ | gene-YMR230W_CBS6412 | rna-NM_001182737.1_CBS6412 | cds-NP_013957.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:703732-704459:+ | gene-YMR230W_CBS6413 | rna-NM_001182737.1_CBS6413 | cds-NP_013957.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:727157-727884:+ | gene-YMR230W_CENPK1137D | rna-NM_001182737.1_CENPK1137D | cds-NP_013957.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:764786-765513:+ | gene-YMR230W_EthanolRed | rna-NM_001182737.1_EthanolRed | cds-NP_013957.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:710438-711165:+ | gene-YMR230W_FaliES1 | rna-NM_001182737.1_FaliES1 | cds-NP_013957.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:74852-75579:- | gene-YMR230W_JAY291 | rna-NM_001182737.1_JAY291 | cds-NP_013957.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:710331-711058:+ | gene-YMR230W_MUCL30387 | rna-NM_001182737.1_MUCL30387 | cds-NP_013957.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:717558-718285:+ | gene-YMR230W_MUCL30388 | rna-NM_001182737.1_MUCL30388 | cds-NP_013957.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:705650-706377:+ | gene-YMR230W_MUCL39482 | rna-NM_001182737.1_MUCL39482 | cds-NP_013957.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:712995-713722:+ | gene-YMR230W_MUCL42920 | rna-NM_001182737.1_MUCL42920 | cds-NP_013957.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:732368-733095:+ | gene-YMR230W_NCIM3186 | rna-NM_001182737.1_NCIM3186 | cds-NP_013957.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:705307-706034:+ | gene-YMR230W_NCYC1407 | rna-NM_001182737.1_NCYC1407 | cds-NP_013957.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:715187-715914:+ | gene-YMR230W_PE2H3 | rna-NM_001182737.1_PE2H3 | cds-NP_013957.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:716205-716932:+ | gene-YMR230W_PE2H4 | rna-NM_001182737.1_PE2H4 | cds-NP_013957.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:732414-733141:+ | gene-YMR230W_S288C | rna-NM_001182737.1_S288C | cds-NP_013957.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:74967-75694:- | gene-YMR230W_SA1 | rna-NM_001182737.1_SA1 | cds-NP_013957.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:706609-707336:+ | gene-YMR230W_ThermosaccDry | rna-NM_001182737.1_ThermosaccDry | cds-NP_013957.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:719722-720449:+ | gene-YMR230W_VR1 | rna-NM_001182737.1_VR1 | cds-NP_013957.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:122314-123041:+ | gene-YMR230W_ZTW1 | rna-NM_001182737.1_ZTW1 | cds-NP_013957.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:724470-725207:+ | gene-YMR230W_Sparadoxus | rna-NM_001182737.1_Sparadoxus | cds-NP_013957.1_Sparadoxus | 97.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |