RPS10B (YMR230W)


Gene profile

Gene name: RPS10B
Reference locus (S288C): YMR230W
Gene biotype: protein_coding

Description: Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S10, no bacterial homolog; RPS10B has a paralog, RPS10A, that arose from the whole genome duplication; mutations in the human homolog associated with Diamond-Blackfan anemia

Top 10 interactors (score): RPS17B (0.999); RPS21B (0.999); RPL30 (0.999); RPL40B (0.999); RPL35A (0.999); RPS2 (0.999); RPS3 (0.999); RPS18A (0.999); RPS14B (0.999); RPL27B (0.999); RPL13A (0.999); RPS4A (0.999); RPS23A (0.999); RPS4B (0.999); RPS12 (0.999); RPS10A (0.999); RPS11A (0.999); RPS8A (0.999); RPL33B (0.999); RPS16B (0.999)

Homologues (species, bitscore): RPS10 (Homo sapiens, 118.2); Rps10 (Mus musculus, 118.2); rps10 (Danio rerio, 114.8); rps10 (Xenopus tropicalis, 118.2); RpS10b (Drosophila melanogaster, 114.4); rps-10 (Caenorhabditis elegans, 101.3); AT5G52650 (Arabidopsis thaliana, 115.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005307.1:772320-773047:+ gene-YMR230W_AKU4011 rna-NM_001182737.1_AKU4011 cds-NP_013957.1_AKU4011 100.0 100.0 Verified 1 1 1 True True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000069.1:181543-182270:- gene-YMR230W_BG1 rna-NM_001182737.1_BG1 cds-NP_013957.1_BG1 100.0 100.0 Verified 1 1 1 True True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005515.1:716547-717274:+ gene-YMR230W_Bruggeman rna-NM_001182737.1_Bruggeman cds-NP_013957.1_Bruggeman 100.0 100.0 Verified 1 1 1 True True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005531.1:720440-721167:+ gene-YMR230W_CAT1 rna-NM_001182737.1_CAT1 cds-NP_013957.1_CAT1 100.0 100.0 Verified 1 1 1 True True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005371.1:704580-705307:+ gene-YMR230W_CBS1585 rna-NM_001182737.1_CBS1585 cds-NP_013957.1_CBS1585 99.3 100.0 Verified 1 1 1 True True False False False
CBS436 GCA_001738355.1 Sake Asia CM005355.1:708849-709576:+ gene-YMR230W_CBS436 rna-NM_001182737.1_CBS436 cds-NP_013957.1_CBS436 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:816142-816869:+ gene-YMR230W_CBS6412 rna-NM_001182737.1_CBS6412 cds-NP_013957.1_CBS6412 100.0 100.0 Mismatch 1 1 1 True True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005323.1:703732-704459:+ gene-YMR230W_CBS6413 rna-NM_001182737.1_CBS6413 cds-NP_013957.1_CBS6413 100.0 100.0 Verified 1 1 1 True True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001534.1:727157-727884:+ gene-YMR230W_CENPK1137D rna-NM_001182737.1_CENPK1137D cds-NP_013957.1_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005486.1:764786-765513:+ gene-YMR230W_EthanolRed rna-NM_001182737.1_EthanolRed cds-NP_013957.1_EthanolRed 100.0 100.0 Verified 1 1 1 True True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005547.1:710438-711165:+ gene-YMR230W_FaliES1 rna-NM_001182737.1_FaliES1 cds-NP_013957.1_FaliES1 100.0 100.0 Verified 1 1 1 True True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000141.1:74852-75579:- gene-YMR230W_JAY291 rna-NM_001182737.1_JAY291 cds-NP_013957.1_JAY291 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005419.1:710331-711058:+ gene-YMR230W_MUCL30387 rna-NM_001182737.1_MUCL30387 cds-NP_013957.1_MUCL30387 100.0 100.0 Verified 1 1 1 True True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005451.1:717558-718285:+ gene-YMR230W_MUCL30388 rna-NM_001182737.1_MUCL30388 cds-NP_013957.1_MUCL30388 100.0 100.0 Verified 1 1 1 True True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005291.1:705650-706377:+ gene-YMR230W_MUCL39482 rna-NM_001182737.1_MUCL39482 cds-NP_013957.1_MUCL39482 99.3 100.0 Verified 1 1 1 True True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005435.1:712995-713722:+ gene-YMR230W_MUCL42920 rna-NM_001182737.1_MUCL42920 cds-NP_013957.1_MUCL42920 100.0 100.0 Verified 1 1 1 True True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011822.1:732368-733095:+ gene-YMR230W_NCIM3186 rna-NM_001182737.1_NCIM3186 cds-NP_013957.1_NCIM3186 99.3 100.0 Verified 1 1 1 True True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005275.1:705307-706034:+ gene-YMR230W_NCYC1407 rna-NM_001182737.1_NCYC1407 cds-NP_013957.1_NCYC1407 100.0 100.0 Verified 1 1 1 True True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994152.1:715187-715914:+ gene-YMR230W_PE2H3 rna-NM_001182737.1_PE2H3 cds-NP_013957.1_PE2H3 100.0 100.0 Verified 1 1 1 True True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999884.1:716205-716932:+ gene-YMR230W_PE2H4 rna-NM_001182737.1_PE2H4 cds-NP_013957.1_PE2H4 100.0 100.0 Verified 1 1 1 True True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001145.3:732414-733141:+ gene-YMR230W_S288C rna-NM_001182737.1_S288C cds-NP_013957.1_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000002.1:74967-75694:- gene-YMR230W_SA1 rna-NM_001182737.1_SA1 cds-NP_013957.1_SA1 100.0 100.0 Verified 1 1 1 True True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005499.1:706609-707336:+ gene-YMR230W_ThermosaccDry rna-NM_001182737.1_ThermosaccDry cds-NP_013957.1_ThermosaccDry 100.0 100.0 Verified 1 1 1 True True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005467.1:719722-720449:+ gene-YMR230W_VR1 rna-NM_001182737.1_VR1 cds-NP_013957.1_VR1 100.0 100.0 Verified 1 1 1 True True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000028.1:122314-123041:+ gene-YMR230W_ZTW1 rna-NM_001182737.1_ZTW1 cds-NP_013957.1_ZTW1 100.0 100.0 Verified 1 1 1 True True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047499.1:724470-725207:+ gene-YMR230W_Sparadoxus rna-NM_001182737.1_Sparadoxus cds-NP_013957.1_Sparadoxus 97.4 100.0 Verified 1 1 1 True True False False False

Additional files