Gene name: RPS0B
Reference locus (S288C): YLR048W
Gene biotype: protein_coding
Description: Protein component of the small (40S) ribosomal subunit; RPS0B has a paralog, RPS0A, that arose from the whole genome duplication; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2
Top 10 interactors (score): RPS2 (0.999); RPS8A (0.999); RPS12 (0.999); RPL19A (0.999); RPS10A (0.999); RPS11A (0.999); RPL8B (0.999); RPL35A (0.999); RPL9B (0.999); RPL40B (0.999); RPS3 (0.999); RPL20A (0.999); RPL6A (0.999); RPL16A (0.999); RPS18A (0.999); RPL15A (0.999); RPL1A (0.999); RPL13A (0.999); RPS14B (0.999); RPL12A (0.999)
Homologues (species, bitscore): RPSA (Homo sapiens, 287.3); Rpsa (Mus musculus, 288.1); rpsa (Danio rerio, 282.3); rpsa (Xenopus tropicalis, 287.0); Sta (Drosophila melanogaster, 278.1); rps-0 (Caenorhabditis elegans, 259.6); P40 (Arabidopsis thaliana, 249.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:224719-225836:+ | gene-YLR048W_AKU4011 | rna-NM_001181935.1_AKU4011 | cds-NP_013149.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:187857-188974:+ | gene-YLR048W_BG1 | rna-NM_001181935.1_BG1 | cds-NP_013149.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:234629-235746:+ | gene-YLR048W_Bruggeman | rna-NM_001181935.1_Bruggeman | cds-NP_013149.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:234953-236070:+ | gene-YLR048W_CAT1 | rna-NM_001181935.1_CAT1 | cds-NP_013149.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:231855-232972:+ | gene-YLR048W_CBS1585 | rna-NM_001181935.1_CBS1585 | cds-NP_013149.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:222489-223606:+ | gene-YLR048W_CBS436 | rna-NM_001181935.1_CBS436 | cds-NP_013149.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:230266-231383:+ | gene-YLR048W_CBS6412 | rna-NM_001181935.1_CBS6412 | cds-NP_013149.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:232118-233235:+ | gene-YLR048W_CBS6413 | rna-NM_001181935.1_CBS6413 | cds-NP_013149.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:221523-222638:+ | gene-YLR048W_CENPK1137D | rna-NM_001181935.1_CENPK1137D | cds-NP_013149.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:224236-225353:+ | gene-YLR048W_EthanolRed | rna-NM_001181935.1_EthanolRed | cds-NP_013149.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:224122-225239:+ | gene-YLR048W_FaliES1 | rna-NM_001181935.1_FaliES1 | cds-NP_013149.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000238.1:1-886:- | gene-YLR048W_JAY291 | rna-NM_001181935.1_JAY291 | cds-NP_013149.1_JAY291 | 69.2 | 69.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:231981-233098:+ | gene-YLR048W_MUCL30387 | rna-NM_001181935.1_MUCL30387 | cds-NP_013149.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:239645-240762:+ | gene-YLR048W_MUCL30388 | rna-NM_001181935.1_MUCL30388 | cds-NP_013149.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:232350-233467:+ | gene-YLR048W_MUCL39482 | rna-NM_001181935.1_MUCL39482 | cds-NP_013149.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:232258-233375:+ | gene-YLR048W_MUCL42920 | rna-NM_001181935.1_MUCL42920 | cds-NP_013149.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:242206-243323:+ | gene-YLR048W_NCIM3186 | rna-NM_001181935.1_NCIM3186 | cds-NP_013149.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:224411-225528:+ | gene-YLR048W_NCYC1407 | rna-NM_001181935.1_NCYC1407 | cds-NP_013149.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:230280-231397:+ | gene-YLR048W_PE2H3 | rna-NM_001181935.1_PE2H3 | cds-NP_013149.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:230021-231138:+ | gene-YLR048W_PE2H4 | rna-NM_001181935.1_PE2H4 | cds-NP_013149.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:242232-243349:+ | gene-YLR048W_S288C | rna-NM_001181935.1_S288C | cds-NP_013149.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000046.1:68120-69237:+ | gene-YLR048W_SA1 | rna-NM_001181935.1_SA1 | cds-NP_013149.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:224308-225425:+ | gene-YLR048W_ThermosaccDry | rna-NM_001181935.1_ThermosaccDry | cds-NP_013149.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:237728-238845:+ | gene-YLR048W_VR1 | rna-NM_001181935.1_VR1 | cds-NP_013149.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:223669-224786:+ | gene-YLR048W_ZTW1 | rna-NM_001181935.1_ZTW1 | cds-NP_013149.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:232532-233654:+ | gene-YLR048W_Sparadoxus | rna-NM_001181935.1_Sparadoxus | cds-NP_013149.1_Sparadoxus | 98.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |