Gene name: RPS0A
Reference locus (S288C): YGR214W
Gene biotype: protein_coding
Description: Ribosomal 40S subunit protein S0A; required for maturation of 18S rRNA along with Rps0Bp; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2; RPS0A has a paralog, RPS0B, that arose from the whole genome duplication;
Top 10 interactors (score): RPL10 (0.999); RPL35B (0.999); RPL43A (0.999); RPS29A (0.999); RPS1A (0.999); RPL18A (0.999); RPL24B (0.999); RPL21A (0.999); RPL25 (0.999); RPL22A (0.999); RPS1B (0.999); TIF35 (0.999); RPL8A (0.999); RPS23B (0.999); EFT2 (0.999); RPS17A (0.999); RPS30B (0.999); RPS21A (0.999); RPL11A (0.999); RPS20 (0.999)
Homologues (species, bitscore): RPSA (Homo sapiens, 289.7); Rpsa (Mus musculus, 289.7); rpsa (Danio rerio, 285.8); rpsa (Xenopus tropicalis, 293.1); Sta (Drosophila melanogaster, 275.4); rps-0 (Caenorhabditis elegans, 256.9); P40 (Arabidopsis thaliana, 250.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:886095-887309:+ | gene-YGR214W_AKU4011 | rna-NM_001181343.1_AKU4011 | cds-NP_011730.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:166473-167687:+ | gene-YGR214W_BG1 | rna-NM_001181343.1_BG1 | cds-NP_011730.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:894291-895503:+ | gene-YGR214W_Bruggeman | rna-NM_001181343.1_Bruggeman | cds-NP_011730.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:892288-893502:+ | gene-YGR214W_CAT1 | rna-NM_001181343.1_CAT1 | cds-NP_011730.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:889535-890749:+ | gene-YGR214W_CBS1585 | rna-NM_001181343.1_CBS1585 | cds-NP_011730.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:892882-894095:+ | gene-YGR214W_CBS436 | rna-NM_001181343.1_CBS436 | cds-NP_011730.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:880405-881619:+ | gene-YGR214W_CBS6412 | rna-NM_001181343.1_CBS6412 | cds-NP_011730.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:886464-887678:+ | gene-YGR214W_CBS6413 | rna-NM_001181343.1_CBS6413 | cds-NP_011730.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:920285-921497:+ | gene-YGR214W_CENPK1137D | rna-NM_001181343.1_CENPK1137D | cds-NP_011730.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:874915-876129:+ | gene-YGR214W_EthanolRed | rna-NM_001181343.1_EthanolRed | cds-NP_011730.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:879306-880520:+ | gene-YGR214W_FaliES1 | rna-NM_001181343.1_FaliES1 | cds-NP_011730.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:37027-38095:+ | gene-YGR214W_JAY291 | rna-NM_001181343.1_JAY291 | cds-NP_011730.1_JAY291 | 80.8 | 80.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:891775-892987:+ | gene-YGR214W_MUCL30387 | rna-NM_001181343.1_MUCL30387 | cds-NP_011730.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:891460-892672:+ | gene-YGR214W_MUCL30388 | rna-NM_001181343.1_MUCL30388 | cds-NP_011730.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:884611-885825:+ | gene-YGR214W_MUCL39482 | rna-NM_001181343.1_MUCL39482 | cds-NP_011730.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:902153-903365:+ | gene-YGR214W_MUCL42920 | rna-NM_001181343.1_MUCL42920 | cds-NP_011730.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:920575-921788:+ | gene-YGR214W_NCIM3186 | rna-NM_001181343.1_NCIM3186 | cds-NP_011730.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:880267-881481:+ | gene-YGR214W_NCYC1407 | rna-NM_001181343.1_NCYC1407 | cds-NP_011730.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:904869-906082:+ | gene-YGR214W_PE2H3 | rna-NM_001181343.1_PE2H3 | cds-NP_011730.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:909979-911192:+ | gene-YGR214W_PE2H4 | rna-NM_001181343.1_PE2H4 | cds-NP_011730.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:920575-921788:+ | gene-YGR214W_S288C | rna-NM_001181343.1_S288C | cds-NP_011730.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:79603-80817:- | gene-YGR214W_SA1 | rna-NM_001181343.1_SA1 | cds-NP_011730.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:899817-901031:+ | gene-YGR214W_ThermosaccDry | rna-NM_001181343.1_ThermosaccDry | cds-NP_011730.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1004297-1005510:+ | gene-YGR214W_VR1 | rna-NM_001181343.1_VR1 | cds-NP_011730.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:201259-202472:+ | gene-YGR214W_ZTW1 | rna-NM_001181343.1_ZTW1 | cds-NP_011730.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:891741-892958:+ | gene-YGR214W_Sparadoxus | rna-NM_001181343.1_Sparadoxus | cds-NP_011730.1_Sparadoxus | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |