Gene name: RPP2B
Reference locus (S288C): YDR382W
Gene biotype: protein_coding
Description: 60S acidic ribosomal protein P2-beta; Ribosomal protein P2 beta; a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; free (non-ribosomal) P2 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm
Top 10 interactors (score): RPL19A (0.999); RPS13 (0.999); RPL19B (0.999); RPP2A (0.999); RPL32 (0.999); RPL3 (0.999); RPL14B (0.999); RPL33A (0.999); RPP0 (0.999); RPL29 (0.999); RPS12 (0.999); TMA19 (0.999); RPL30 (0.999); RPS31 (0.999); RPL10 (0.999); RPS25A (0.999); RPS2 (0.999); RPS3 (0.999); RPL6A (0.999); RPL1A (0.999)
Homologues (species, bitscore): RPLP2 (Homo sapiens, 114.8); Rplp2 (Mus musculus, 115.2); rplp2l (Danio rerio, 115.2); rplp2 (Xenopus tropicalis, 113.2); RpLP2 (Drosophila melanogaster, 98.6); C37A2.7 (Caenorhabditis elegans, 111.3); AT2G27710 (Arabidopsis thaliana, 100.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:574885-575217:+ | gene-YDR382W_AKU4011 | rna-NM_001180690.3_AKU4011 | cds-NP_010670.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:58182-58514:+ | gene-YDR382W_BG1 | rna-NM_001180690.3_BG1 | cds-NP_010670.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1210270-1210602:+ | gene-YDR382W_Bruggeman | rna-NM_001180690.3_Bruggeman | cds-NP_010670.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1188874-1189206:+ | gene-YDR382W_CAT1 | rna-NM_001180690.3_CAT1 | cds-NP_010670.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1174373-1174705:+ | gene-YDR382W_CBS1585 | rna-NM_001180690.3_CBS1585 | cds-NP_010670.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1192925-1193257:+ | gene-YDR382W_CBS436 | rna-NM_001180690.3_CBS436 | cds-NP_010670.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1170642-1170974:+ | gene-YDR382W_CBS6412 | rna-NM_001180690.3_CBS6412 | cds-NP_010670.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1192504-1192836:+ | gene-YDR382W_CBS6413 | rna-NM_001180690.3_CBS6413 | cds-NP_010670.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1238132-1238464:+ | gene-YDR382W_CENPK1137D | rna-NM_001180690.3_CENPK1137D | cds-NP_010670.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1184040-1184372:+ | gene-YDR382W_EthanolRed | rna-NM_001180690.3_EthanolRed | cds-NP_010670.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1187350-1187682:+ | gene-YDR382W_FaliES1 | rna-NM_001180690.3_FaliES1 | cds-NP_010670.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:3440-3772:- | gene-YDR382W_JAY291 | rna-NM_001180690.3_JAY291 | cds-NP_010670.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1193585-1193917:+ | gene-YDR382W_MUCL30387 | rna-NM_001180690.3_MUCL30387 | cds-NP_010670.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1176193-1176525:+ | gene-YDR382W_MUCL30388 | rna-NM_001180690.3_MUCL30388 | cds-NP_010670.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1165924-1166256:+ | gene-YDR382W_MUCL39482 | rna-NM_001180690.3_MUCL39482 | cds-NP_010670.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1108321-1108653:+ | gene-YDR382W_MUCL42920 | rna-NM_001180690.3_MUCL42920 | cds-NP_010670.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1239415-1239747:+ | gene-YDR382W_NCIM3186 | rna-NM_001180690.3_NCIM3186 | cds-NP_010670.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1179895-1180227:+ | gene-YDR382W_NCYC1407 | rna-NM_001180690.3_NCYC1407 | cds-NP_010670.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1189981-1190313:+ | gene-YDR382W_PE2H3 | rna-NM_001180690.3_PE2H3 | cds-NP_010670.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1195552-1195884:+ | gene-YDR382W_PE2H4 | rna-NM_001180690.3_PE2H4 | cds-NP_010670.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1239492-1239824:+ | gene-YDR382W_S288C | rna-NM_001180690.3_S288C | cds-NP_010670.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:58263-58595:+ | gene-YDR382W_SA1 | rna-NM_001180690.3_SA1 | cds-NP_010670.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1191612-1191944:+ | gene-YDR382W_ThermosaccDry | rna-NM_001180690.3_ThermosaccDry | cds-NP_010670.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:618936-619268:+ | gene-YDR382W_VR1 | rna-NM_001180690.3_VR1 | cds-NP_010670.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:234426-234758:+ | gene-YDR382W_ZTW1 | rna-NM_001180690.3_ZTW1 | cds-NP_010670.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1186168-1186500:+ | gene-YDR382W_Sparadoxus | rna-NM_001180690.3_Sparadoxus | cds-NP_010670.3_Sparadoxus | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |