Gene name: RPP2A
Reference locus (S288C): YOL039W
Gene biotype: protein_coding
Description: 60S acidic ribosomal protein P2-alpha; Ribosomal protein P2 alpha; a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; free (non-ribosomal) P2 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm
Top 10 interactors (score): RPL18A (0.999); RPS0A (0.999); RPP1B (0.999); RPL21A (0.999); RPS25A (0.999); RPL42B (0.999); RPL7A (0.999); ASC1 (0.999); RPS31 (0.999); RPL10 (0.999); RPL35B (0.999); RPL8A (0.999); RPS23B (0.999); EFT2 (0.999); RPS17A (0.999); RPS21A (0.999); RPL11A (0.999); RPS20 (0.999); RPL25 (0.999); RPL22A (0.999)
Homologues (species, bitscore): RPLP2 (Homo sapiens, 104.0); Rplp2 (Mus musculus, 104.0); rplp2 (Danio rerio, 104.8); LOC100135138 (Xenopus tropicalis, 100.9); RpLP2 (Drosophila melanogaster, 90.1); C37A2.7 (Caenorhabditis elegans, 101.7); AT2G27710 (Arabidopsis thaliana, 84.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:238660-238980:+ | gene-YOL039W_AKU4011 | rna-NM_001183293.1_AKU4011 | cds-NP_014603.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:54281-54601:+ | gene-YOL039W_BG1 | rna-NM_001183293.1_BG1 | cds-NP_014603.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:241516-241836:+ | gene-YOL039W_Bruggeman | rna-NM_001183293.1_Bruggeman | cds-NP_014603.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:239373-239693:+ | gene-YOL039W_CAT1 | rna-NM_001183293.1_CAT1 | cds-NP_014603.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:233330-233650:+ | gene-YOL039W_CBS1585 | rna-NM_001183293.1_CBS1585 | cds-NP_014603.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:237609-237929:+ | gene-YOL039W_CBS436 | rna-NM_001183293.1_CBS436 | cds-NP_014603.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:232694-233014:+ | gene-YOL039W_CBS6412 | rna-NM_001183293.1_CBS6412 | cds-NP_014603.1_CBS6412 | 97.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:240213-240533:+ | gene-YOL039W_CBS6413 | rna-NM_001183293.1_CBS6413 | cds-NP_014603.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:253998-254318:+ | gene-YOL039W_CENPK1137D | rna-NM_001183293.1_CENPK1137D | cds-NP_014603.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:235650-235970:+ | gene-YOL039W_EthanolRed | rna-NM_001183293.1_EthanolRed | cds-NP_014603.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:238566-238886:+ | gene-YOL039W_FaliES1 | rna-NM_001183293.1_FaliES1 | cds-NP_014603.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:27576-27896:- | gene-YOL039W_JAY291 | rna-NM_001183293.1_JAY291 | cds-NP_014603.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:244538-244858:+ | gene-YOL039W_MUCL30387 | rna-NM_001183293.1_MUCL30387 | cds-NP_014603.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:248888-249208:+ | gene-YOL039W_MUCL30388 | rna-NM_001183293.1_MUCL30388 | cds-NP_014603.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:240815-241135:+ | gene-YOL039W_MUCL39482 | rna-NM_001183293.1_MUCL39482 | cds-NP_014603.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:255750-256070:+ | gene-YOL039W_MUCL42920 | rna-NM_001183293.1_MUCL42920 | cds-NP_014603.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:254186-254506:+ | gene-YOL039W_NCIM3186 | rna-NM_001183293.1_NCIM3186 | cds-NP_014603.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:247559-247879:+ | gene-YOL039W_NCYC1407 | rna-NM_001183293.1_NCYC1407 | cds-NP_014603.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:229975-230295:+ | gene-YOL039W_PE2H3 | rna-NM_001183293.1_PE2H3 | cds-NP_014603.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:240949-241269:+ | gene-YOL039W_PE2H4 | rna-NM_001183293.1_PE2H4 | cds-NP_014603.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:254297-254617:+ | gene-YOL039W_S288C | rna-NM_001183293.1_S288C | cds-NP_014603.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:222297-222617:+ | gene-YOL039W_SA1 | rna-NM_001183293.1_SA1 | cds-NP_014603.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:237137-237457:+ | gene-YOL039W_ThermosaccDry | rna-NM_001183293.1_ThermosaccDry | cds-NP_014603.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:237200-237520:+ | gene-YOL039W_VR1 | rna-NM_001183293.1_VR1 | cds-NP_014603.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:237003-237323:+ | gene-YOL039W_ZTW1 | rna-NM_001183293.1_ZTW1 | cds-NP_014603.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:245421-245741:+ | gene-YOL039W_Sparadoxus | rna-NM_001183293.1_Sparadoxus | cds-NP_014603.1_Sparadoxus | 96.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |