Gene name: RPP1B
Reference locus (S288C): YDL130W
Gene biotype: protein_coding
Description: 60S acidic ribosomal protein P1-beta; Ribosomal protein P1 beta; component of the ribosomal stalk, which is involved in interaction of translational elongation factors with ribosome; free (non-ribosomal) P1 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; accumulation is regulated by phosphorylation and interaction with the P2 stalk component
Top 10 interactors (score): RPL28 (0.999); RPS15 (0.999); RPP1A (0.999); RPL6B (0.999); RPL17A (0.999); RPL29 (0.999); RPL24A (0.999); RPP0 (0.999); RPL33A (0.999); RPL14B (0.999); RPL3 (0.999); RPL39 (0.999); RPP2A (0.999); RPL32 (0.999); RPS13 (0.999); RPS12 (0.999); RPL30 (0.999); RPL16A (0.999); RPS2 (0.999); RPS3 (0.999)
Homologues (species, bitscore): RPLP1 (Homo sapiens, 79.3); Rplp1 (Mus musculus, 77.4); rplp1 (Danio rerio, 84.7); rplp1 (Xenopus tropicalis, 87.4); RpLP1 (Drosophila melanogaster, 85.5); rla-1 (Caenorhabditis elegans, 85.9); AT5G47700 (Arabidopsis thaliana, 87.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:214523-215144:+ | gene-YDL130W_AKU4011 | rna-NM_001180189.1_AKU4011 | cds-NP_010153.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:334812-335433:- | gene-YDL130W_BG1 | rna-NM_001180189.1_BG1 | cds-NP_010153.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:231702-232323:+ | gene-YDL130W_Bruggeman | rna-NM_001180189.1_Bruggeman | cds-NP_010153.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:228705-229325:+ | gene-YDL130W_CAT1 | rna-NM_001180189.1_CAT1 | cds-NP_010153.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:212788-213409:+ | gene-YDL130W_CBS1585 | rna-NM_001180189.1_CBS1585 | cds-NP_010153.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:229466-230087:+ | gene-YDL130W_CBS436 | rna-NM_001180189.1_CBS436 | cds-NP_010153.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:211213-211834:+ | gene-YDL130W_CBS6412 | rna-NM_001180189.1_CBS6412 | cds-NP_010153.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:230948-231569:+ | gene-YDL130W_CBS6413 | rna-NM_001180189.1_CBS6413 | cds-NP_010153.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:228679-229300:+ | gene-YDL130W_CENPK1137D | rna-NM_001180189.1_CENPK1137D | cds-NP_010153.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:225553-226174:+ | gene-YDL130W_EthanolRed | rna-NM_001180189.1_EthanolRed | cds-NP_010153.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:231523-232144:+ | gene-YDL130W_FaliES1 | rna-NM_001180189.1_FaliES1 | cds-NP_010153.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:1593-2214:+ | gene-YDL130W_JAY291 | rna-NM_001180189.1_JAY291 | cds-NP_010153.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:229756-230377:+ | gene-YDL130W_MUCL30387 | rna-NM_001180189.1_MUCL30387 | cds-NP_010153.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:220520-221141:+ | gene-YDL130W_MUCL30388 | rna-NM_001180189.1_MUCL30388 | cds-NP_010153.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:213890-214511:+ | gene-YDL130W_MUCL39482 | rna-NM_001180189.1_MUCL39482 | cds-NP_010153.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:135685-136306:+ | gene-YDL130W_MUCL42920 | rna-NM_001180189.1_MUCL42920 | cds-NP_010153.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:229829-230450:+ | gene-YDL130W_NCIM3186 | rna-NM_001180189.1_NCIM3186 | cds-NP_010153.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:213921-214542:+ | gene-YDL130W_NCYC1407 | rna-NM_001180189.1_NCYC1407 | cds-NP_010153.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:220692-221313:+ | gene-YDL130W_PE2H3 | rna-NM_001180189.1_PE2H3 | cds-NP_010153.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:220696-221317:+ | gene-YDL130W_PE2H4 | rna-NM_001180189.1_PE2H4 | cds-NP_010153.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:229906-230527:+ | gene-YDL130W_S288C | rna-NM_001180189.1_S288C | cds-NP_010153.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:204372-204993:- | gene-YDL130W_SA1 | rna-NM_001180189.1_SA1 | cds-NP_010153.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:231034-231655:+ | gene-YDL130W_ThermosaccDry | rna-NM_001180189.1_ThermosaccDry | cds-NP_010153.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:233167-233787:+ | gene-YDL130W_VR1 | rna-NM_001180189.1_VR1 | cds-NP_010153.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:228965-229586:+ | gene-YDL130W_ZTW1 | rna-NM_001180189.1_ZTW1 | cds-NP_010153.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:231036-231686:+ | gene-YDL130W_Sparadoxus | rna-NM_001180189.1_Sparadoxus | cds-NP_010153.1_Sparadoxus | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |