Gene name: RPP1A
Reference locus (S288C): YDL081C
Gene biotype: protein_coding
Description: 60S acidic ribosomal protein P1-alpha; Ribosomal stalk protein P1 alpha; involved in the interaction between translational elongation factors and the ribosome; free (non-ribosomal) P1 stimulates the phosphorylation of the eIF2 alpha subunit (Sui2p) by Gcn2p; accumulation of P1 in the cytoplasm is regulated by phosphorylation and interaction with the P2 stalk component
Top 10 interactors (score): RPS1A (0.999); RPL18A (0.999); RPL24B (0.999); RPS0A (0.999); RPP1B (0.999); RPL21A (0.999); RPL25 (0.999); ASC1 (0.999); RPS25A (0.999); RPL42B (0.999); RPS28B (0.999); RPL7A (0.999); RPL10 (0.999); RPS31 (0.999); RPL35B (0.999); RPL43A (0.999); RPS29A (0.999); RPL8A (0.999); RPS1B (0.999); RPL22A (0.999)
Homologues (species, bitscore): RPLP1 (Homo sapiens, 87.4); Rplp1 (Mus musculus, 86.7); rplp1 (Danio rerio, 93.2); rplp1 (Xenopus tropicalis, 94.7); RpLP1 (Drosophila melanogaster, 102.4); rla-1 (Caenorhabditis elegans, 103.6); AT1G01100 (Arabidopsis thaliana, 88.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:294416-294736:- | gene-YDL081C_AKU4011 | rna-NM_001180140.1_AKU4011 | cds-NP_010202.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:255211-255531:+ | gene-YDL081C_BG1 | rna-NM_001180140.1_BG1 | cds-NP_010202.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:312085-312405:- | gene-YDL081C_Bruggeman | rna-NM_001180140.1_Bruggeman | cds-NP_010202.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:308575-308895:- | gene-YDL081C_CAT1 | rna-NM_001180140.1_CAT1 | cds-NP_010202.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:292688-293008:- | gene-YDL081C_CBS1585 | rna-NM_001180140.1_CBS1585 | cds-NP_010202.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:309354-309674:- | gene-YDL081C_CBS436 | rna-NM_001180140.1_CBS436 | cds-NP_010202.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:291115-291435:- | gene-YDL081C_CBS6412 | rna-NM_001180140.1_CBS6412 | cds-NP_010202.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:310741-311061:- | gene-YDL081C_CBS6413 | rna-NM_001180140.1_CBS6413 | cds-NP_010202.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:308625-308945:- | gene-YDL081C_CENPK1137D | rna-NM_001180140.1_CENPK1137D | cds-NP_010202.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:305450-305770:- | gene-YDL081C_EthanolRed | rna-NM_001180140.1_EthanolRed | cds-NP_010202.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:311422-311742:- | gene-YDL081C_FaliES1 | rna-NM_001180140.1_FaliES1 | cds-NP_010202.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000010.1:81475-81795:- | gene-YDL081C_JAY291 | rna-NM_001180140.1_JAY291 | cds-NP_010202.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:309601-309921:- | gene-YDL081C_MUCL30387 | rna-NM_001180140.1_MUCL30387 | cds-NP_010202.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:300625-300945:- | gene-YDL081C_MUCL30388 | rna-NM_001180140.1_MUCL30388 | cds-NP_010202.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:293793-294113:- | gene-YDL081C_MUCL39482 | rna-NM_001180140.1_MUCL39482 | cds-NP_010202.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:215802-216122:- | gene-YDL081C_MUCL42920 | rna-NM_001180140.1_MUCL42920 | cds-NP_010202.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:309725-310045:- | gene-YDL081C_NCIM3186 | rna-NM_001180140.1_NCIM3186 | cds-NP_010202.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:293807-294127:- | gene-YDL081C_NCYC1407 | rna-NM_001180140.1_NCYC1407 | cds-NP_010202.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:300593-300913:- | gene-YDL081C_PE2H3 | rna-NM_001180140.1_PE2H3 | cds-NP_010202.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:300590-300910:- | gene-YDL081C_PE2H4 | rna-NM_001180140.1_PE2H4 | cds-NP_010202.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:309802-310122:- | gene-YDL081C_S288C | rna-NM_001180140.1_S288C | cds-NP_010202.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:124799-125119:+ | gene-YDL081C_SA1 | rna-NM_001180140.1_SA1 | cds-NP_010202.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:310933-311253:- | gene-YDL081C_ThermosaccDry | rna-NM_001180140.1_ThermosaccDry | cds-NP_010202.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:313009-313329:- | gene-YDL081C_VR1 | rna-NM_001180140.1_VR1 | cds-NP_010202.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:308848-309168:- | gene-YDL081C_ZTW1 | rna-NM_001180140.1_ZTW1 | cds-NP_010202.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:310957-311277:- | gene-YDL081C_Sparadoxus | rna-NM_001180140.1_Sparadoxus | cds-NP_010202.1_Sparadoxus | 96.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |