Gene name: RPP1
Reference locus (S288C): YHR062C
Gene biotype: protein_coding
Description: Ribonuclease P/MRP protein subunit RPP1; Subunit of both RNase MRP and nuclear RNase P; RNase MRP cleaves pre-rRNA, while nuclear RNase P cleaves tRNA precursors to generate mature 5' ends and facilitates turnover of nuclear RNAs; relocalizes to the cytosol in response to hypoxia; Belongs to the eukaryotic/archaeal RNase P protein component 3 family
Top 10 interactors (score): RPR2 (0.999); POP1 (0.999); POP7 (0.999); POP3 (0.999); POP6 (0.999); POP5 (0.999); RMP1 (0.999); POP4 (0.999); POP8 (0.999); SNU13 (0.998); SNM1 (0.988); RPM2 (0.979); RRP9 (0.947); NHP2 (0.934); NOP58 (0.925); LCP5 (0.92); NOP1 (0.917); NOP56 (0.913); MUS81 (0.912); SEN54 (0.901)
Homologues (species, bitscore): RPP30 (Homo sapiens, 100.9); Rpp30 (Mus musculus, 104.0); rpp30 (Danio rerio, 81.6); rpp30 (Xenopus tropicalis, 95.9); Rpp30 (Drosophila melanogaster, 74.3); GAF1 (Arabidopsis thaliana, 86.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:209137-210036:- | gene-YHR062C_AKU4011 | rna-NM_001179192.1_AKU4011 | cds-NP_011929.1_AKU4011 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:130277-131158:- | gene-YHR062C_BG1 | rna-NM_001179192.1_BG1 | cds-NP_011929.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:216895-217776:- | gene-YHR062C_Bruggeman | rna-NM_001179192.1_Bruggeman | cds-NP_011929.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:211685-212575:- | gene-YHR062C_CAT1 | rna-NM_001179192.1_CAT1 | cds-NP_011929.1_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:208243-209142:- | gene-YHR062C_CBS1585 | rna-NM_001179192.1_CBS1585 | cds-NP_011929.1_CBS1585 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:206201-207082:- | gene-YHR062C_CBS436 | rna-NM_001179192.1_CBS436 | cds-NP_011929.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:208475-209356:- | gene-YHR062C_CBS6412 | rna-NM_001179192.1_CBS6412 | cds-NP_011929.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:209307-210188:- | gene-YHR062C_CBS6413 | rna-NM_001179192.1_CBS6413 | cds-NP_011929.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:216041-216922:- | gene-YHR062C_CENPK1137D | rna-NM_001179192.1_CENPK1137D | cds-NP_011929.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:208633-209532:- | gene-YHR062C_EthanolRed | rna-NM_001179192.1_EthanolRed | cds-NP_011929.1_EthanolRed | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:209610-210509:- | gene-YHR062C_FaliES1 | rna-NM_001179192.1_FaliES1 | cds-NP_011929.1_FaliES1 | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000280.1:6816-7697:+ | gene-YHR062C_JAY291 | rna-NM_001179192.1_JAY291 | cds-NP_011929.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:216647-217528:- | gene-YHR062C_MUCL30387 | rna-NM_001179192.1_MUCL30387 | cds-NP_011929.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:216532-217413:- | gene-YHR062C_MUCL30388 | rna-NM_001179192.1_MUCL30388 | cds-NP_011929.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:208528-209409:- | gene-YHR062C_MUCL39482 | rna-NM_001179192.1_MUCL39482 | cds-NP_011929.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:215437-216318:- | gene-YHR062C_MUCL42920 | rna-NM_001179192.1_MUCL42920 | cds-NP_011929.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:222759-223640:- | gene-YHR062C_NCIM3186 | rna-NM_001179192.1_NCIM3186 | cds-NP_011929.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:680169-681050:- | gene-YHR062C_NCYC1407 | rna-NM_001179192.1_NCYC1407 | cds-NP_011929.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:210732-211613:- | gene-YHR062C_PE2H3 | rna-NM_001179192.1_PE2H3 | cds-NP_011929.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:218179-219060:- | gene-YHR062C_PE2H4 | rna-NM_001179192.1_PE2H4 | cds-NP_011929.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:222877-223758:- | gene-YHR062C_S288C | rna-NM_001179192.1_S288C | cds-NP_011929.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:135664-136563:+ | gene-YHR062C_SA1 | rna-NM_001179192.1_SA1 | cds-NP_011929.1_SA1 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:210701-211600:- | gene-YHR062C_ThermosaccDry | rna-NM_001179192.1_ThermosaccDry | cds-NP_011929.1_ThermosaccDry | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:218341-219222:- | gene-YHR062C_VR1 | rna-NM_001179192.1_VR1 | cds-NP_011929.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:202254-203153:- | gene-YHR062C_ZTW1 | rna-NM_001179192.1_ZTW1 | cds-NP_011929.1_ZTW1 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:207835-208716:- | gene-YHR062C_Sparadoxus | rna-NM_001179192.1_Sparadoxus | cds-NP_011929.1_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |