Gene name: RPP0
Reference locus (S288C): YLR340W
Gene biotype: protein_coding
Description: Conserved ribosomal protein P0 of the ribosomal stalk; involved in interaction between translational elongation factors and the ribosome; phosphorylated on serine 302; homologous to mammalian ribosomal protein LP0 and bacterial L10
Top 10 interactors (score): RPP1B (0.999); RPL24B (0.999); RPS0A (0.999); RPL25 (0.999); RPL22A (0.999); ARX1 (0.999); RPS1B (0.999); RPL8A (0.999); RPS30B (0.999); RPS23B (0.999); RPS17A (0.999); EFT2 (0.999); RPL11A (0.999); RPS21A (0.999); RPS20 (0.999); RPL21A (0.999); RPS1A (0.999); RPL18A (0.999); RPL43A (0.999); RPS29A (0.999)
Homologues (species, bitscore): RPLP0 (Homo sapiens, 358.2); Rplp0 (Mus musculus, 362.1); rplp0 (Danio rerio, 357.5); rplp0 (Xenopus tropicalis, 357.8); RpLP0 (Drosophila melanogaster, 333.2); rla-0 (Caenorhabditis elegans, 338.6); AT3G09200 (Arabidopsis thaliana, 293.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:755410-756348:+ | gene-YLR340W_AKU4011 | rna-NM_001182229.1_AKU4011 | cds-NP_013444.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:21973-22911:+ | gene-YLR340W_BG1 | rna-NM_001182229.1_BG1 | cds-NP_013444.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:791759-792697:+ | gene-YLR340W_Bruggeman | rna-NM_001182229.1_Bruggeman | cds-NP_013444.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:788714-789652:+ | gene-YLR340W_CAT1 | rna-NM_001182229.1_CAT1 | cds-NP_013444.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:790463-791401:+ | gene-YLR340W_CBS1585 | rna-NM_001182229.1_CBS1585 | cds-NP_013444.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:773770-774708:+ | gene-YLR340W_CBS436 | rna-NM_001182229.1_CBS436 | cds-NP_013444.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:827459-828397:+ | gene-YLR340W_CBS6412 | rna-NM_001182229.1_CBS6412 | cds-NP_013444.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:791329-792267:+ | gene-YLR340W_CBS6413 | rna-NM_001182229.1_CBS6413 | cds-NP_013444.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:790504-791442:+ | gene-YLR340W_CENPK1137D | rna-NM_001182229.1_CENPK1137D | cds-NP_013444.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:747629-748567:+ | gene-YLR340W_EthanolRed | rna-NM_001182229.1_EthanolRed | cds-NP_013444.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:776830-777768:+ | gene-YLR340W_FaliES1 | rna-NM_001182229.1_FaliES1 | cds-NP_013444.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000315.1:11460-12398:- | gene-YLR340W_JAY291 | rna-NM_001182229.1_JAY291 | cds-NP_013444.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:790212-791150:+ | gene-YLR340W_MUCL30387 | rna-NM_001182229.1_MUCL30387 | cds-NP_013444.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:795558-796496:+ | gene-YLR340W_MUCL30388 | rna-NM_001182229.1_MUCL30388 | cds-NP_013444.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:791682-792620:+ | gene-YLR340W_MUCL39482 | rna-NM_001182229.1_MUCL39482 | cds-NP_013444.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:786959-787897:+ | gene-YLR340W_MUCL42920 | rna-NM_001182229.1_MUCL42920 | cds-NP_013444.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:805861-806799:+ | gene-YLR340W_NCIM3186 | rna-NM_001182229.1_NCIM3186 | cds-NP_013444.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:800902-801840:+ | gene-YLR340W_NCYC1407 | rna-NM_001182229.1_NCYC1407 | cds-NP_013444.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:787534-788472:+ | gene-YLR340W_PE2H3 | rna-NM_001182229.1_PE2H3 | cds-NP_013444.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:787278-788216:+ | gene-YLR340W_PE2H4 | rna-NM_001182229.1_PE2H4 | cds-NP_013444.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:805887-806825:+ | gene-YLR340W_S288C | rna-NM_001182229.1_S288C | cds-NP_013444.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:242147-243085:- | gene-YLR340W_SA1 | rna-NM_001182229.1_SA1 | cds-NP_013444.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:778722-779660:+ | gene-YLR340W_ThermosaccDry | rna-NM_001182229.1_ThermosaccDry | cds-NP_013444.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:791775-792713:+ | gene-YLR340W_VR1 | rna-NM_001182229.1_VR1 | cds-NP_013444.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:117111-118049:+ | gene-YLR340W_ZTW1 | rna-NM_001182229.1_ZTW1 | cds-NP_013444.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:765132-766070:+ | gene-YLR340W_Sparadoxus | rna-NM_001182229.1_Sparadoxus | cds-NP_013444.1_Sparadoxus | 96.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |