Gene name: RPO41
Reference locus (S288C): YFL036W
Gene biotype: protein_coding
Description: Mitochondrial RNA polymerase; single subunit enzyme similar to those of T3 and T7 bacteriophages; requires a specificity subunit encoded by MTF1 for promoter recognition; Mtf1p interacts with and stabilizes the Rpo41p-promoter complex, enhancing DNA bending and melting to facilitate pre-initiation open complex formation; Rpo41p also synthesizes RNA primers for mitochondrial DNA replication
Top 10 interactors (score): MTF1 (0.999); MTF2 (0.971); MNP1 (0.957); PET309 (0.954); SUV3 (0.951); DIM1 (0.936); MIP1 (0.922); ATP6 (0.914); RET1 (0.89); MGM101 (0.883); MSS116 (0.882); ABF2 (0.881); NOG2 (0.876); PWP2 (0.872); COB (0.866); COX2 (0.849); ORI5 (0.846); COX1 (0.831); CCM1 (0.789); IRC3 (0.759)
Homologues (species, bitscore): POLRMT (Homo sapiens, 488.0); Polrmt (Mus musculus, 475.7); POLRMT (Danio rerio, 494.2); polrmt (Xenopus tropicalis, 487.6); mtRNApol (Drosophila melanogaster, 447.2); rpom-1 (Caenorhabditis elegans, 382.9); AT5G15700 (Arabidopsis thaliana, 539.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:55112-59167:+ | gene-YFL036W_AKU4011 | rna-NM_001179930.1_AKU4011 | cds-NP_116617.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000182.1:10565-14620:- | gene-YFL036W_BG1 | rna-NM_001179930.1_BG1 | cds-NP_116617.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:53984-58039:+ | gene-YFL036W_Bruggeman | rna-NM_001179930.1_Bruggeman | cds-NP_116617.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:58878-62933:+ | gene-YFL036W_CAT1 | rna-NM_001179930.1_CAT1 | cds-NP_116617.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:55921-59976:+ | gene-YFL036W_CBS1585 | rna-NM_001179930.1_CBS1585 | cds-NP_116617.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:29421-33476:+ | gene-YFL036W_CBS436 | rna-NM_001179930.1_CBS436 | cds-NP_116617.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:55657-59712:+ | gene-YFL036W_CBS6412 | rna-NM_001179930.1_CBS6412 | cds-NP_116617.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:58187-62242:+ | gene-YFL036W_CBS6413 | rna-NM_001179930.1_CBS6413 | cds-NP_116617.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:55112-59167:+ | gene-YFL036W_CENPK1137D | rna-NM_001179930.1_CENPK1137D | cds-NP_116617.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:54239-58294:+ | gene-YFL036W_EthanolRed | rna-NM_001179930.1_EthanolRed | cds-NP_116617.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:55663-59718:+ | gene-YFL036W_FaliES1 | rna-NM_001179930.1_FaliES1 | cds-NP_116617.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000448.1:64113-68168:+ | gene-YFL036W_JAY291 | rna-NM_001179930.1_JAY291 | cds-NP_116617.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:56084-60139:+ | gene-YFL036W_MUCL30387 | rna-NM_001179930.1_MUCL30387 | cds-NP_116617.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:53983-58038:+ | gene-YFL036W_MUCL30388 | rna-NM_001179930.1_MUCL30388 | cds-NP_116617.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:54306-58361:+ | gene-YFL036W_MUCL39482 | rna-NM_001179930.1_MUCL39482 | cds-NP_116617.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:52005-56060:+ | gene-YFL036W_MUCL42920 | rna-NM_001179930.1_MUCL42920 | cds-NP_116617.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:58781-62836:+ | gene-YFL036W_NCIM3186 | rna-NM_001179930.1_NCIM3186 | cds-NP_116617.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:55379-59434:+ | gene-YFL036W_NCYC1407 | rna-NM_001179930.1_NCYC1407 | cds-NP_116617.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:75268-79323:+ | gene-YFL036W_PE2H3 | rna-NM_001179930.1_PE2H3 | cds-NP_116617.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:74819-78874:+ | gene-YFL036W_PE2H4 | rna-NM_001179930.1_PE2H4 | cds-NP_116617.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:58782-62837:+ | gene-YFL036W_S288C | rna-NM_001179930.1_S288C | cds-NP_116617.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:272798-276853:- | gene-YFL036W_SA1 | rna-NM_001179930.1_SA1 | cds-NP_116617.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:54856-58911:+ | gene-YFL036W_ThermosaccDry | rna-NM_001179930.1_ThermosaccDry | cds-NP_116617.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:63394-67449:+ | gene-YFL036W_VR1 | rna-NM_001179930.1_VR1 | cds-NP_116617.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000012.1:40146-44201:+ | gene-YFL036W_ZTW1 | rna-NM_001179930.1_ZTW1 | cds-NP_116617.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047492.1:79183-83238:+ | gene-YFL036W_Sparadoxus | rna-NM_001179930.1_Sparadoxus | cds-NP_116617.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |