Gene name: RPO31
Reference locus (S288C): YOR116C
Gene biotype: protein_coding
Description: RNA polymerase III largest subunit C160; part of core enzyme; similar to bacterial beta-prime subunit and to RPA190 and RPO21; Belongs to the RNA polymerase beta' chain family
Top 10 interactors (score): RPA135 (0.999); RPC53 (0.999); RPC37 (0.999); RPC40 (0.999); RPB5 (0.999); RPC82 (0.999); RPC34 (0.999); RPC25 (0.999); RPB10 (0.999); RPC19 (0.999); RPB8 (0.999); RPC11 (0.999); RPC17 (0.999); RPA190 (0.999); RET1 (0.999); RPO26 (0.999); RPC31 (0.999); RPC10 (0.998); RPB3 (0.997); BDP1 (0.995)
Homologues (species, bitscore): POLR3A (Homo sapiens, 1416.7); Polr3a (Mus musculus, 1411.0); polr3a (Danio rerio, 1411.0); polr3a (Xenopus tropicalis, 1203.0); CG17209 (Drosophila melanogaster, 1222.2); rpc-1 (Caenorhabditis elegans, 1250.7); NRPC1 (Arabidopsis thaliana, 1154.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:523827-528209:- | gene-YOR116C_AKU4011 | rna-NM_001183535.1_AKU4011 | cds-NP_014759.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:51058-55440:+ | gene-YOR116C_BG1 | rna-NM_001183535.1_BG1 | cds-NP_014759.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:527375-531757:- | gene-YOR116C_Bruggeman | rna-NM_001183535.1_Bruggeman | cds-NP_014759.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:527380-531762:- | gene-YOR116C_CAT1 | rna-NM_001183535.1_CAT1 | cds-NP_014759.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:519390-523772:- | gene-YOR116C_CBS1585 | rna-NM_001183535.1_CBS1585 | cds-NP_014759.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:524100-528482:- | gene-YOR116C_CBS436 | rna-NM_001183535.1_CBS436 | cds-NP_014759.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:517875-522257:- | gene-YOR116C_CBS6412 | rna-NM_001183535.1_CBS6412 | cds-NP_014759.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:525172-529554:- | gene-YOR116C_CBS6413 | rna-NM_001183535.1_CBS6413 | cds-NP_014759.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:539843-544225:- | gene-YOR116C_CENPK1137D | rna-NM_001183535.1_CENPK1137D | cds-NP_014759.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:520196-524578:- | gene-YOR116C_EthanolRed | rna-NM_001183535.1_EthanolRed | cds-NP_014759.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:523891-528273:- | gene-YOR116C_FaliES1 | rna-NM_001183535.1_FaliES1 | cds-NP_014759.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:30991-35373:+ | gene-YOR116C_JAY291 | rna-NM_001183535.1_JAY291 | cds-NP_014759.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:531933-536315:- | gene-YOR116C_MUCL30387 | rna-NM_001183535.1_MUCL30387 | cds-NP_014759.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:537141-541523:- | gene-YOR116C_MUCL30388 | rna-NM_001183535.1_MUCL30388 | cds-NP_014759.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:526784-531166:- | gene-YOR116C_MUCL39482 | rna-NM_001183535.1_MUCL39482 | cds-NP_014759.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:542831-547213:- | gene-YOR116C_MUCL42920 | rna-NM_001183535.1_MUCL42920 | cds-NP_014759.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:539652-544034:- | gene-YOR116C_NCIM3186 | rna-NM_001183535.1_NCIM3186 | cds-NP_014759.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:533232-537614:- | gene-YOR116C_NCYC1407 | rna-NM_001183535.1_NCYC1407 | cds-NP_014759.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:532237-536619:- | gene-YOR116C_PE2H3 | rna-NM_001183535.1_PE2H3 | cds-NP_014759.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:542614-546996:- | gene-YOR116C_PE2H4 | rna-NM_001183535.1_PE2H4 | cds-NP_014759.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:539763-544145:- | gene-YOR116C_S288C | rna-NM_001183535.1_S288C | cds-NP_014759.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000034.1:69305-73687:- | gene-YOR116C_SA1 | rna-NM_001183535.1_SA1 | cds-NP_014759.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:523075-527457:- | gene-YOR116C_ThermosaccDry | rna-NM_001183535.1_ThermosaccDry | cds-NP_014759.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:525182-529564:- | gene-YOR116C_VR1 | rna-NM_001183535.1_VR1 | cds-NP_014759.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:257015-261396:- | gene-YOR116C_ZTW1 | rna-NM_001183535.1_ZTW1 | cds-NP_014759.1_ZTW1 | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:529053-533435:- | gene-YOR116C_Sparadoxus | rna-NM_001183535.1_Sparadoxus | cds-NP_014759.1_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |