Gene name: RPO21
Reference locus (S288C): YDL140C
Gene biotype: protein_coding
Description: RNA polymerase II largest subunit B220; part of central core; phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors; similar to bacterial beta-prime
Top 10 interactors (score): TFG2 (0.999); RPB7 (0.999); SSN3 (0.999); CTR9 (0.999); SPT15 (0.999); RTT103 (0.999); RPB4 (0.999); RPB2 (0.999); RPB8 (0.999); RPC10 (0.999); CDC73 (0.999); SSU72 (0.999); CTK1 (0.999); SET2 (0.999); TFG1 (0.999); TFA2 (0.999); RPB5 (0.999); SSL2 (0.999); KIN28 (0.999); RPB11 (0.999)
Homologues (species, bitscore): POLR2A (Homo sapiens, 1896.3); Polr2a (Mus musculus, 1891.7); polr2a (Danio rerio, 1894.8); polr2a (Xenopus tropicalis, 1876.3); RpII215 (Drosophila melanogaster, 1792.7); ama-1 (Caenorhabditis elegans, 1854.3); NRPB1 (Arabidopsis thaliana, 1979.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:189777-194978:- | gene-YDL140C_AKU4011 | rna-NM_001180200.1_AKU4011 | cds-NP_010141.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:354800-360001:+ | gene-YDL140C_BG1 | rna-NM_001180200.1_BG1 | cds-NP_010141.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:205820-211021:- | gene-YDL140C_Bruggeman | rna-NM_001180200.1_Bruggeman | cds-NP_010141.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:204142-209343:- | gene-YDL140C_CAT1 | rna-NM_001180200.1_CAT1 | cds-NP_010141.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:187808-192967:- | gene-YDL140C_CBS1585 | rna-NM_001180200.1_CBS1585 | cds-NP_010141.1_CBS1585 | 99.1 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:204747-209948:- | gene-YDL140C_CBS436 | rna-NM_001180200.1_CBS436 | cds-NP_010141.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:187061-192262:- | gene-YDL140C_CBS6412 | rna-NM_001180200.1_CBS6412 | cds-NP_010141.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:206246-211426:- | gene-YDL140C_CBS6413 | rna-NM_001180200.1_CBS6413 | cds-NP_010141.1_CBS6413 | 99.5 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:204012-209213:- | gene-YDL140C_CENPK1137D | rna-NM_001180200.1_CENPK1137D | cds-NP_010141.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:201016-206217:- | gene-YDL140C_EthanolRed | rna-NM_001180200.1_EthanolRed | cds-NP_010141.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:206548-211749:- | gene-YDL140C_FaliES1 | rna-NM_001180200.1_FaliES1 | cds-NP_010141.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:7800-13001:+ | gene-YDL140C_JAY291 | rna-NM_001180200.1_JAY291 | cds-NP_010141.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:204934-210135:- | gene-YDL140C_MUCL30387 | rna-NM_001180200.1_MUCL30387 | cds-NP_010141.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:195794-200995:- | gene-YDL140C_MUCL30388 | rna-NM_001180200.1_MUCL30388 | cds-NP_010141.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:188963-194122:- | gene-YDL140C_MUCL39482 | rna-NM_001180200.1_MUCL39482 | cds-NP_010141.1_MUCL39482 | 99.0 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:7756-12957:+ | gene-YDL140C_MUCL42920 | rna-NM_001180200.1_MUCL42920 | cds-NP_010141.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:205283-210484:- | gene-YDL140C_NCIM3186 | rna-NM_001180200.1_NCIM3186 | cds-NP_010141.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:188897-194098:- | gene-YDL140C_NCYC1407 | rna-NM_001180200.1_NCYC1407 | cds-NP_010141.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:196140-201341:- | gene-YDL140C_PE2H3 | rna-NM_001180200.1_PE2H3 | cds-NP_010141.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:196144-201345:- | gene-YDL140C_PE2H4 | rna-NM_001180200.1_PE2H4 | cds-NP_010141.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:205360-210561:- | gene-YDL140C_S288C | rna-NM_001180200.1_S288C | cds-NP_010141.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:70917-76097:- | gene-YDL140C_SA1 | rna-NM_001180200.1_SA1 | cds-NP_010141.1_SA1 | 99.3 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:206309-211510:- | gene-YDL140C_ThermosaccDry | rna-NM_001180200.1_ThermosaccDry | cds-NP_010141.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:206903-212332:- | gene-YDL140C_VR1 | rna-NM_001180200.1_VR1 | cds-NP_010141.1_VR1 | 95.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:204435-209636:- | gene-YDL140C_ZTW1 | rna-NM_001180200.1_ZTW1 | cds-NP_010141.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:206559-211739:- | gene-YDL140C_Sparadoxus | rna-NM_001180200.1_Sparadoxus | cds-NP_010141.1_Sparadoxus | 92.4 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |