Gene name: RPN9
Reference locus (S288C): YDR427W
Gene biotype: protein_coding
Description: Non-ATPase regulatory subunit of the 26S proteasome; similar to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia
Top 10 interactors (score): PRE6 (0.999); PRE10 (0.999); RPN10 (0.999); RPT1 (0.999); RPN2 (0.999); SEM1 (0.999); RPN6 (0.999); RPN11 (0.999); RPT6 (0.999); RPN3 (0.999); RPN13 (0.999); PRE4 (0.999); RPT3 (0.999); PRE9 (0.999); RPT4 (0.999); PUP3 (0.999); PRE1 (0.999); PRE7 (0.999); PUP2 (0.999); PRE8 (0.999)
Homologues (species, bitscore): PSMD13 (Homo sapiens, 172.6); Psmd13 (Mus musculus, 201.8); psmd13 (Danio rerio, 210.3); psmd13 (Xenopus tropicalis, 200.7); Rpn9 (Drosophila melanogaster, 193.0); rpn-9 (Caenorhabditis elegans, 141.7); AT4G19006 (Arabidopsis thaliana, 198.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1262473-1263654:+ | gene-YDR427W_AKU4011 | rna-NM_001180735.3_AKU4011 | cds-NP_010715.3_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:140812-141993:+ | gene-YDR427W_BG1 | rna-NM_001180735.3_BG1 | cds-NP_010715.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1292860-1294041:+ | gene-YDR427W_Bruggeman | rna-NM_001180735.3_Bruggeman | cds-NP_010715.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1271054-1272235:+ | gene-YDR427W_CAT1 | rna-NM_001180735.3_CAT1 | cds-NP_010715.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1256802-1257983:+ | gene-YDR427W_CBS1585 | rna-NM_001180735.3_CBS1585 | cds-NP_010715.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1276134-1277315:+ | gene-YDR427W_CBS436 | rna-NM_001180735.3_CBS436 | cds-NP_010715.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1252768-1253949:+ | gene-YDR427W_CBS6412 | rna-NM_001180735.3_CBS6412 | cds-NP_010715.3_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1274917-1276098:+ | gene-YDR427W_CBS6413 | rna-NM_001180735.3_CBS6413 | cds-NP_010715.3_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1320883-1322064:+ | gene-YDR427W_CENPK1137D | rna-NM_001180735.3_CENPK1137D | cds-NP_010715.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1266050-1267231:+ | gene-YDR427W_EthanolRed | rna-NM_001180735.3_EthanolRed | cds-NP_010715.3_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1269357-1270538:+ | gene-YDR427W_FaliES1 | rna-NM_001180735.3_FaliES1 | cds-NP_010715.3_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000263.1:13636-14817:+ | gene-YDR427W_JAY291 | rna-NM_001180735.3_JAY291 | cds-NP_010715.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1276502-1277683:+ | gene-YDR427W_MUCL30387 | rna-NM_001180735.3_MUCL30387 | cds-NP_010715.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1258438-1259619:+ | gene-YDR427W_MUCL30388 | rna-NM_001180735.3_MUCL30388 | cds-NP_010715.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1248294-1249475:+ | gene-YDR427W_MUCL39482 | rna-NM_001180735.3_MUCL39482 | cds-NP_010715.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1190694-1191875:+ | gene-YDR427W_MUCL42920 | rna-NM_001180735.3_MUCL42920 | cds-NP_010715.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1322128-1323309:+ | gene-YDR427W_NCIM3186 | rna-NM_001180735.3_NCIM3186 | cds-NP_010715.3_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1262058-1263239:+ | gene-YDR427W_NCYC1407 | rna-NM_001180735.3_NCYC1407 | cds-NP_010715.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1272879-1274060:+ | gene-YDR427W_PE2H3 | rna-NM_001180735.3_PE2H3 | cds-NP_010715.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1278447-1279628:+ | gene-YDR427W_PE2H4 | rna-NM_001180735.3_PE2H4 | cds-NP_010715.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1322205-1323386:+ | gene-YDR427W_S288C | rna-NM_001180735.3_S288C | cds-NP_010715.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000082.1:33831-35012:- | gene-YDR427W_SA1 | rna-NM_001180735.3_SA1 | cds-NP_010715.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1273619-1274800:+ | gene-YDR427W_ThermosaccDry | rna-NM_001180735.3_ThermosaccDry | cds-NP_010715.3_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1288841-1290022:+ | gene-YDR427W_VR1 | rna-NM_001180735.3_VR1 | cds-NP_010715.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:316261-317442:+ | gene-YDR427W_ZTW1 | rna-NM_001180735.3_ZTW1 | cds-NP_010715.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1269998-1271180:+ | gene-YDR427W_Sparadoxus | rna-NM_001180735.3_Sparadoxus | cds-NP_010715.3_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |