Gene name: RPN8
Reference locus (S288C): YOR261C
Gene biotype: protein_coding
Description: Essential non-ATPase regulatory subunit of the 26S proteasome; has similarity to the human p40 proteasomal subunit and to another S. cerevisiae regulatory subunit, Rpn11p; Belongs to the peptidase M67A family
Top 10 interactors (score): RPN5 (0.999); RPN12 (0.999); PRE3 (0.999); RPN7 (0.999); PUP1 (0.999); RPT5 (0.999); RPN9 (0.999); UBP6 (0.999); PRE2 (0.999); RPN10 (0.999); RPN11 (0.999); RPN2 (0.999); RPT1 (0.999); RPT2 (0.999); PRE5 (0.999); RPN1 (0.999); SCL1 (0.999); PRE6 (0.999); PUP2 (0.999); PRE9 (0.999)
Homologues (species, bitscore): PSMD7 (Homo sapiens, 320.9); Psmd7 (Mus musculus, 317.4); psmd7 (Danio rerio, 319.3); psmd7 (Xenopus tropicalis, 315.8); Rpn8 (Drosophila melanogaster, 310.1); rpn-8 (Caenorhabditis elegans, 292.0); MEE34 (Arabidopsis thaliana, 308.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:806696-807706:- | gene-YOR261C_AKU4011 | rna-NM_001183680.3_AKU4011 | cds-NP_014904.3_AKU4011 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:208724-209734:- | gene-YOR261C_BG1 | rna-NM_001183680.3_BG1 | cds-NP_014904.3_BG1 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:792149-793165:- | gene-YOR261C_Bruggeman | rna-NM_001183680.3_Bruggeman | cds-NP_014904.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:792802-793818:- | gene-YOR261C_CAT1 | rna-NM_001183680.3_CAT1 | cds-NP_014904.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:789679-790689:- | gene-YOR261C_CBS1585 | rna-NM_001183680.3_CBS1585 | cds-NP_014904.3_CBS1585 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:788367-789383:- | gene-YOR261C_CBS436 | rna-NM_001183680.3_CBS436 | cds-NP_014904.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:786464-787474:- | gene-YOR261C_CBS6412 | rna-NM_001183680.3_CBS6412 | cds-NP_014904.3_CBS6412 | 98.4 | 99.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:795441-796451:- | gene-YOR261C_CBS6413 | rna-NM_001183680.3_CBS6413 | cds-NP_014904.3_CBS6413 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:815676-816692:- | gene-YOR261C_CENPK1137D | rna-NM_001183680.3_CENPK1137D | cds-NP_014904.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:782809-783819:- | gene-YOR261C_EthanolRed | rna-NM_001183680.3_EthanolRed | cds-NP_014904.3_EthanolRed | 98.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:788208-789218:- | gene-YOR261C_FaliES1 | rna-NM_001183680.3_FaliES1 | cds-NP_014904.3_FaliES1 | 98.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:37618-38628:+ | gene-YOR261C_JAY291 | rna-NM_001183680.3_JAY291 | cds-NP_014904.3_JAY291 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:796431-797441:- | gene-YOR261C_MUCL30387 | rna-NM_001183680.3_MUCL30387 | cds-NP_014904.3_MUCL30387 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:803547-804557:- | gene-YOR261C_MUCL30388 | rna-NM_001183680.3_MUCL30388 | cds-NP_014904.3_MUCL30388 | 98.5 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:797013-798023:- | gene-YOR261C_MUCL39482 | rna-NM_001183680.3_MUCL39482 | cds-NP_014904.3_MUCL39482 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:806594-807610:- | gene-YOR261C_MUCL42920 | rna-NM_001183680.3_MUCL42920 | cds-NP_014904.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:815804-816820:- | gene-YOR261C_NCIM3186 | rna-NM_001183680.3_NCIM3186 | cds-NP_014904.3_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:797108-798118:- | gene-YOR261C_NCYC1407 | rna-NM_001183680.3_NCYC1407 | cds-NP_014904.3_NCYC1407 | 98.4 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:796406-797416:- | gene-YOR261C_PE2H3 | rna-NM_001183680.3_PE2H3 | cds-NP_014904.3_PE2H3 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:806783-807793:- | gene-YOR261C_PE2H4 | rna-NM_001183680.3_PE2H4 | cds-NP_014904.3_PE2H4 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:815915-816931:- | gene-YOR261C_S288C | rna-NM_001183680.3_S288C | cds-NP_014904.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:225905-226921:- | gene-YOR261C_SA1 | rna-NM_001183680.3_SA1 | cds-NP_014904.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:787391-788401:- | gene-YOR261C_ThermosaccDry | rna-NM_001183680.3_ThermosaccDry | cds-NP_014904.3_ThermosaccDry | 98.3 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:850846-851856:- | gene-YOR261C_VR1 | rna-NM_001183680.3_VR1 | cds-NP_014904.3_VR1 | 98.6 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:520312-521322:- | gene-YOR261C_ZTW1 | rna-NM_001183680.3_ZTW1 | cds-NP_014904.3_ZTW1 | 98.5 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:793185-794195:- | gene-YOR261C_Sparadoxus | rna-NM_001183680.3_Sparadoxus | cds-NP_014904.3_Sparadoxus | 91.1 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |