Gene name: RPN7
Reference locus (S288C): YPR108W
Gene biotype: protein_coding
Description: Proteasome regulatory particle lid subunit rpn7; Essential non-ATPase regulatory subunit of the 26S proteasome; similar to another S. cerevisiae regulatory subunit, Rpn5p, as well as to mammalian proteasome subunits
Top 10 interactors (score): RPN5 (0.999); PRE2 (0.999); RPN12 (0.999); PRE5 (0.999); PRE10 (0.999); RPT6 (0.999); SCL1 (0.999); RPN1 (0.999); PRE3 (0.999); RPT2 (0.999); RPN10 (0.999); RPN11 (0.999); PRE9 (0.999); PUP2 (0.999); PRE6 (0.999); UBP6 (0.999); RPN8 (0.999); PUP1 (0.999); RPT5 (0.999); RPN9 (0.999)
Homologues (species, bitscore): PSMD6 (Homo sapiens, 261.2); Psmd6 (Mus musculus, 272.7); psmd6 (Danio rerio, 264.6); psmd6 (Xenopus tropicalis, 264.2); Rpn7 (Drosophila melanogaster, 255.4); rpn-7 (Caenorhabditis elegans, 234.6); AT4G24820 (Arabidopsis thaliana, 270.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:714287-715576:+ | gene-YPR108W_AKU4011 | rna-NM_001184205.1_AKU4011 | cds-NP_015433.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:182264-183553:- | gene-YPR108W_BG1 | rna-NM_001184205.1_BG1 | cds-NP_015433.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:792296-793585:+ | gene-YPR108W_Bruggeman | rna-NM_001184205.1_Bruggeman | cds-NP_015433.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:836599-837888:+ | gene-YPR108W_CAT1 | rna-NM_001184205.1_CAT1 | cds-NP_015433.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:718544-719833:+ | gene-YPR108W_CBS1585 | rna-NM_001184205.1_CBS1585 | cds-NP_015433.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:732841-734130:+ | gene-YPR108W_CBS436 | rna-NM_001184205.1_CBS436 | cds-NP_015433.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:720780-722069:+ | gene-YPR108W_CBS6412 | rna-NM_001184205.1_CBS6412 | cds-NP_015433.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:715501-716790:+ | gene-YPR108W_CBS6413 | rna-NM_001184205.1_CBS6413 | cds-NP_015433.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:742439-743728:+ | gene-YPR108W_CENPK1137D | rna-NM_001184205.1_CENPK1137D | cds-NP_015433.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1040901-1042190:+ | gene-YPR108W_EthanolRed | rna-NM_001184205.1_EthanolRed | cds-NP_015433.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:720448-721737:+ | gene-YPR108W_FaliES1 | rna-NM_001184205.1_FaliES1 | cds-NP_015433.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:11210-12499:+ | gene-YPR108W_JAY291 | rna-NM_001184205.1_JAY291 | cds-NP_015433.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:733554-734843:+ | gene-YPR108W_MUCL30387 | rna-NM_001184205.1_MUCL30387 | cds-NP_015433.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:732247-733536:+ | gene-YPR108W_MUCL30388 | rna-NM_001184205.1_MUCL30388 | cds-NP_015433.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:711051-712340:+ | gene-YPR108W_MUCL39482 | rna-NM_001184205.1_MUCL39482 | cds-NP_015433.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:774146-775435:+ | gene-YPR108W_MUCL42920 | rna-NM_001184205.1_MUCL42920 | cds-NP_015433.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:742437-743726:+ | gene-YPR108W_NCIM3186 | rna-NM_001184205.1_NCIM3186 | cds-NP_015433.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:719645-720934:+ | gene-YPR108W_NCYC1407 | rna-NM_001184205.1_NCYC1407 | cds-NP_015433.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:725885-727174:+ | gene-YPR108W_PE2H3 | rna-NM_001184205.1_PE2H3 | cds-NP_015433.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:725533-726822:+ | gene-YPR108W_PE2H4 | rna-NM_001184205.1_PE2H4 | cds-NP_015433.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:742454-743743:+ | gene-YPR108W_S288C | rna-NM_001184205.1_S288C | cds-NP_015433.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:40570-41859:+ | gene-YPR108W_SA1 | rna-NM_001184205.1_SA1 | cds-NP_015433.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:719893-721182:+ | gene-YPR108W_ThermosaccDry | rna-NM_001184205.1_ThermosaccDry | cds-NP_015433.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:736552-737841:+ | gene-YPR108W_VR1 | rna-NM_001184205.1_VR1 | cds-NP_015433.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:718943-720232:+ | gene-YPR108W_ZTW1 | rna-NM_001184205.1_ZTW1 | cds-NP_015433.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:719882-721171:+ | gene-YPR108W_Sparadoxus | rna-NM_001184205.1_Sparadoxus | cds-NP_015433.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |