Gene name: RPN5
Reference locus (S288C): YDL147W
Gene biotype: protein_coding
Description: Subunit of the CSN and 26S proteasome lid complexes; similar to mammalian p55 subunit and to another S. cerevisiae regulatory subunit, Rpn7p; Rpn5p is an essential protein; the COP9 signalosome is also known as the CSN
Top 10 interactors (score): RPT4 (0.999); PUP3 (0.999); PRE7 (0.999); PRE4 (0.999); RPT3 (0.999); PRE3 (0.999); PRE9 (0.999); PUP2 (0.999); PRE6 (0.999); RPN8 (0.999); RPN7 (0.999); RPN9 (0.999); PUP1 (0.999); RPT5 (0.999); RPN10 (0.999); UBP6 (0.999); PRE2 (0.999); RPN12 (0.999); RPN11 (0.999); PRE1 (0.999)
Homologues (species, bitscore): PSMD12 (Homo sapiens, 364.4); Psmd12 (Mus musculus, 364.0); psmd12 (Danio rerio, 369.0); psmd12 (Xenopus tropicalis, 344.4); Rpn5 (Drosophila melanogaster, 263.8); rpn-5 (Caenorhabditis elegans, 283.9); RPN5B (Arabidopsis thaliana, 289.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:175341-176678:+ | gene-YDL147W_AKU4011 | rna-NM_001180207.1_AKU4011 | cds-NP_010134.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:373102-374439:- | gene-YDL147W_BG1 | rna-NM_001180207.1_BG1 | cds-NP_010134.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:191385-192722:+ | gene-YDL147W_Bruggeman | rna-NM_001180207.1_Bruggeman | cds-NP_010134.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:189704-191041:+ | gene-YDL147W_CAT1 | rna-NM_001180207.1_CAT1 | cds-NP_010134.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:173372-174709:+ | gene-YDL147W_CBS1585 | rna-NM_001180207.1_CBS1585 | cds-NP_010134.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:190310-191647:+ | gene-YDL147W_CBS436 | rna-NM_001180207.1_CBS436 | cds-NP_010134.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:172625-173962:+ | gene-YDL147W_CBS6412 | rna-NM_001180207.1_CBS6412 | cds-NP_010134.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:191810-193147:+ | gene-YDL147W_CBS6413 | rna-NM_001180207.1_CBS6413 | cds-NP_010134.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:189576-190913:+ | gene-YDL147W_CENPK1137D | rna-NM_001180207.1_CENPK1137D | cds-NP_010134.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:186580-187917:+ | gene-YDL147W_EthanolRed | rna-NM_001180207.1_EthanolRed | cds-NP_010134.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:192112-193449:+ | gene-YDL147W_FaliES1 | rna-NM_001180207.1_FaliES1 | cds-NP_010134.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:26103-27440:- | gene-YDL147W_JAY291 | rna-NM_001180207.1_JAY291 | cds-NP_010134.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:190499-191836:+ | gene-YDL147W_MUCL30387 | rna-NM_001180207.1_MUCL30387 | cds-NP_010134.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:181360-182697:+ | gene-YDL147W_MUCL30388 | rna-NM_001180207.1_MUCL30388 | cds-NP_010134.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:174527-175864:+ | gene-YDL147W_MUCL39482 | rna-NM_001180207.1_MUCL39482 | cds-NP_010134.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:26055-27392:- | gene-YDL147W_MUCL42920 | rna-NM_001180207.1_MUCL42920 | cds-NP_010134.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:190847-192184:+ | gene-YDL147W_NCIM3186 | rna-NM_001180207.1_NCIM3186 | cds-NP_010134.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:174463-175800:+ | gene-YDL147W_NCYC1407 | rna-NM_001180207.1_NCYC1407 | cds-NP_010134.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:181698-183035:+ | gene-YDL147W_PE2H3 | rna-NM_001180207.1_PE2H3 | cds-NP_010134.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:181702-183039:+ | gene-YDL147W_PE2H4 | rna-NM_001180207.1_PE2H4 | cds-NP_010134.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:190924-192261:+ | gene-YDL147W_S288C | rna-NM_001180207.1_S288C | cds-NP_010134.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:56481-57818:+ | gene-YDL147W_SA1 | rna-NM_001180207.1_SA1 | cds-NP_010134.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:191873-193210:+ | gene-YDL147W_ThermosaccDry | rna-NM_001180207.1_ThermosaccDry | cds-NP_010134.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:192467-193804:+ | gene-YDL147W_VR1 | rna-NM_001180207.1_VR1 | cds-NP_010134.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:190000-191337:+ | gene-YDL147W_ZTW1 | rna-NM_001180207.1_ZTW1 | cds-NP_010134.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:192123-193460:+ | gene-YDL147W_Sparadoxus | rna-NM_001180207.1_Sparadoxus | cds-NP_010134.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |