Gene name: RPN4
Reference locus (S288C): YDL020C
Gene biotype: protein_coding
Description: Protein RPN4; Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally regulated by various stress responses; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): PRE9 (0.966); UBR2 (0.935); YAP1 (0.915); MSC1 (0.897); RPN2 (0.894); RPN10 (0.88); BLM10 (0.866); SEM1 (0.842); PDR3 (0.84); HAC1 (0.825); MUB1 (0.792); PDR1 (0.789); RPT1 (0.788); UBP6 (0.78); RPT6 (0.763); UMP1 (0.755); BTN2 (0.753); HSF1 (0.753); MSN4 (0.75); MSN2 (0.749)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:401194-402789:- | gene-YDL020C_AKU4011 | rna-NM_001180079.3_AKU4011 | cds-NP_010264.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:147089-148684:+ | gene-YDL020C_BG1 | rna-NM_001180079.3_BG1 | cds-NP_010264.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:421696-423291:- | gene-YDL020C_Bruggeman | rna-NM_001180079.3_Bruggeman | cds-NP_010264.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:414654-416249:- | gene-YDL020C_CAT1 | rna-NM_001180079.3_CAT1 | cds-NP_010264.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:397607-399202:- | gene-YDL020C_CBS1585 | rna-NM_001180079.3_CBS1585 | cds-NP_010264.3_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:415137-416732:- | gene-YDL020C_CBS436 | rna-NM_001180079.3_CBS436 | cds-NP_010264.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:395376-396971:- | gene-YDL020C_CBS6412 | rna-NM_001180079.3_CBS6412 | cds-NP_010264.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:417373-418968:- | gene-YDL020C_CBS6413 | rna-NM_001180079.3_CBS6413 | cds-NP_010264.3_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:413972-415567:- | gene-YDL020C_CENPK1137D | rna-NM_001180079.3_CENPK1137D | cds-NP_010264.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:410026-411621:- | gene-YDL020C_EthanolRed | rna-NM_001180079.3_EthanolRed | cds-NP_010264.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:416218-417813:- | gene-YDL020C_FaliES1 | rna-NM_001180079.3_FaliES1 | cds-NP_010264.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:30727-32322:- | gene-YDL020C_JAY291 | rna-NM_001180079.3_JAY291 | cds-NP_010264.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:415585-417180:- | gene-YDL020C_MUCL30387 | rna-NM_001180079.3_MUCL30387 | cds-NP_010264.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:406110-407705:- | gene-YDL020C_MUCL30388 | rna-NM_001180079.3_MUCL30388 | cds-NP_010264.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:399281-400876:- | gene-YDL020C_MUCL39482 | rna-NM_001180079.3_MUCL39482 | cds-NP_010264.3_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:321163-322758:- | gene-YDL020C_MUCL42920 | rna-NM_001180079.3_MUCL42920 | cds-NP_010264.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:415036-416631:- | gene-YDL020C_NCIM3186 | rna-NM_001180079.3_NCIM3186 | cds-NP_010264.3_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:398703-400298:- | gene-YDL020C_NCYC1407 | rna-NM_001180079.3_NCYC1407 | cds-NP_010264.3_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:406209-407804:- | gene-YDL020C_PE2H3 | rna-NM_001180079.3_PE2H3 | cds-NP_010264.3_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:405567-407162:- | gene-YDL020C_PE2H4 | rna-NM_001180079.3_PE2H4 | cds-NP_010264.3_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:415113-416708:- | gene-YDL020C_S288C | rna-NM_001180079.3_S288C | cds-NP_010264.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:18255-19850:+ | gene-YDL020C_SA1 | rna-NM_001180079.3_SA1 | cds-NP_010264.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:415678-417273:- | gene-YDL020C_ThermosaccDry | rna-NM_001180079.3_ThermosaccDry | cds-NP_010264.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:418707-420302:- | gene-YDL020C_VR1 | rna-NM_001180079.3_VR1 | cds-NP_010264.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:413578-415173:- | gene-YDL020C_ZTW1 | rna-NM_001180079.3_ZTW1 | cds-NP_010264.3_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:417661-419271:- | gene-YDL020C_Sparadoxus | rna-NM_001180079.3_Sparadoxus | cds-NP_010264.3_Sparadoxus | 88.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |