Gene name: RPN3
Reference locus (S288C): YER021W
Gene biotype: protein_coding
Description: Essential non-ATPase regulatory subunit of the 26S proteasome lid; similar to the p58 subunit of the human 26S proteasome; temperature-sensitive alleles cause metaphase arrest, suggesting a role for the proteasome in cell cycle control
Top 10 interactors (score): RPN6 (0.999); RPN1 (0.999); PRE5 (0.999); RPT2 (0.999); RPT5 (0.999); SCL1 (0.999); PRE9 (0.999); PUP2 (0.999); PRE6 (0.999); RPN10 (0.999); RPN11 (0.999); RPN12 (0.999); PRE2 (0.999); RPN5 (0.999); UBP6 (0.999); RPN9 (0.999); PUP1 (0.999); RPN8 (0.999); RPN7 (0.999); PRE3 (0.999)
Homologues (species, bitscore): PSMD3 (Homo sapiens, 270.8); Psmd3 (Mus musculus, 270.0); psmd3 (Danio rerio, 275.0); psmd3 (Xenopus tropicalis, 265.0); Rpn3 (Drosophila melanogaster, 255.0); rpn-3 (Caenorhabditis elegans, 209.5); AT1G75990 (Arabidopsis thaliana, 241.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:190980-192551:+ | gene-YER021W_AKU4011 | rna-NM_001178912.1_AKU4011 | cds-NP_010938.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:233537-235108:- | gene-YER021W_BG1 | rna-NM_001178912.1_BG1 | cds-NP_010938.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:198837-200408:+ | gene-YER021W_Bruggeman | rna-NM_001178912.1_Bruggeman | cds-NP_010938.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:193729-195300:+ | gene-YER021W_CAT1 | rna-NM_001178912.1_CAT1 | cds-NP_010938.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:190903-192474:+ | gene-YER021W_CBS1585 | rna-NM_001178912.1_CBS1585 | cds-NP_010938.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:192491-194062:+ | gene-YER021W_CBS436 | rna-NM_001178912.1_CBS436 | cds-NP_010938.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:191147-192718:+ | gene-YER021W_CBS6412 | rna-NM_001178912.1_CBS6412 | cds-NP_010938.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:195933-197504:+ | gene-YER021W_CBS6413 | rna-NM_001178912.1_CBS6413 | cds-NP_010938.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:194847-196418:+ | gene-YER021W_CENPK1137D | rna-NM_001178912.1_CENPK1137D | cds-NP_010938.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:191609-193180:+ | gene-YER021W_EthanolRed | rna-NM_001178912.1_EthanolRed | cds-NP_010938.1_EthanolRed | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:191868-193439:+ | gene-YER021W_FaliES1 | rna-NM_001178912.1_FaliES1 | cds-NP_010938.1_FaliES1 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000024.1:58492-60063:+ | gene-YER021W_JAY291 | rna-NM_001178912.1_JAY291 | cds-NP_010938.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:195047-196618:+ | gene-YER021W_MUCL30387 | rna-NM_001178912.1_MUCL30387 | cds-NP_010938.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:191282-192853:+ | gene-YER021W_MUCL30388 | rna-NM_001178912.1_MUCL30388 | cds-NP_010938.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:189947-191518:+ | gene-YER021W_MUCL39482 | rna-NM_001178912.1_MUCL39482 | cds-NP_010938.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:197033-198604:+ | gene-YER021W_MUCL42920 | rna-NM_001178912.1_MUCL42920 | cds-NP_010938.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:196947-198518:+ | gene-YER021W_NCIM3186 | rna-NM_001178912.1_NCIM3186 | cds-NP_010938.1_NCIM3186 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:195018-196589:+ | gene-YER021W_NCYC1407 | rna-NM_001178912.1_NCYC1407 | cds-NP_010938.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:199333-200904:+ | gene-YER021W_PE2H3 | rna-NM_001178912.1_PE2H3 | cds-NP_010938.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:195233-196804:+ | gene-YER021W_PE2H4 | rna-NM_001178912.1_PE2H4 | cds-NP_010938.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:196948-198519:+ | gene-YER021W_S288C | rna-NM_001178912.1_S288C | cds-NP_010938.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:45166-46737:- | gene-YER021W_SA1 | rna-NM_001178912.1_SA1 | cds-NP_010938.1_SA1 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:192639-194210:+ | gene-YER021W_ThermosaccDry | rna-NM_001178912.1_ThermosaccDry | cds-NP_010938.1_ThermosaccDry | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:191393-192964:+ | gene-YER021W_VR1 | rna-NM_001178912.1_VR1 | cds-NP_010938.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:189850-191421:+ | gene-YER021W_ZTW1 | rna-NM_001178912.1_ZTW1 | cds-NP_010938.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:193576-195147:+ | gene-YER021W_Sparadoxus | rna-NM_001178912.1_Sparadoxus | cds-NP_010938.1_Sparadoxus | 92.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |