Gene name: RPN2
Reference locus (S288C): YIL075C
Gene biotype: protein_coding
Description: Subunit of the 26S proteasome; substrate of the N-acetyltransferase Nat1p; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): PRE7 (0.999); PRE1 (0.999); PUP3 (0.999); PRE4 (0.999); RPT3 (0.999); RPT4 (0.999); PRE9 (0.999); PUP2 (0.999); RPT6 (0.999); SCL1 (0.999); RPT2 (0.999); PRE5 (0.999); RPN1 (0.999); RPN6 (0.999); SEM1 (0.999); RPT1 (0.999); RPN3 (0.999); RPN13 (0.999); PRE8 (0.999); PRE10 (0.999)
Homologues (species, bitscore): PSMD1 (Homo sapiens, 726.9); Psmd1 (Mus musculus, 729.6); psmd1 (Danio rerio, 729.9); psmd1 (Xenopus tropicalis, 707.6); Rpn2 (Drosophila melanogaster, 679.5); rpn-2 (Caenorhabditis elegans, 440.7); AT1G04810 (Arabidopsis thaliana, 686.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:214531-217368:- | gene-YIL075C_AKU4011 | rna-NM_001179425.1_AKU4011 | cds-NP_012190.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:76464-79301:- | gene-YIL075C_BG1 | rna-NM_001179425.1_BG1 | cds-NP_012190.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:219947-222784:- | gene-YIL075C_Bruggeman | rna-NM_001179425.1_Bruggeman | cds-NP_012190.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:210226-213063:- | gene-YIL075C_CAT1 | rna-NM_001179425.1_CAT1 | cds-NP_012190.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:214102-216939:- | gene-YIL075C_CBS1585 | rna-NM_001179425.1_CBS1585 | cds-NP_012190.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:210154-212991:- | gene-YIL075C_CBS436 | rna-NM_001179425.1_CBS436 | cds-NP_012190.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:211479-214316:- | gene-YIL075C_CBS6412 | rna-NM_001179425.1_CBS6412 | cds-NP_012190.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:206022-208859:- | gene-YIL075C_CBS6413 | rna-NM_001179425.1_CBS6413 | cds-NP_012190.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:209567-212404:- | gene-YIL075C_CENPK1137D | rna-NM_001179425.1_CENPK1137D | cds-NP_012190.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:198826-201663:- | gene-YIL075C_EthanolRed | rna-NM_001179425.1_EthanolRed | cds-NP_012190.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:215734-218571:- | gene-YIL075C_FaliES1 | rna-NM_001179425.1_FaliES1 | cds-NP_012190.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:10939-13776:+ | gene-YIL075C_JAY291 | rna-NM_001179425.1_JAY291 | cds-NP_012190.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:218163-221000:- | gene-YIL075C_MUCL30387 | rna-NM_001179425.1_MUCL30387 | cds-NP_012190.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:214772-217609:- | gene-YIL075C_MUCL30388 | rna-NM_001179425.1_MUCL30388 | cds-NP_012190.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:214949-217786:- | gene-YIL075C_MUCL39482 | rna-NM_001179425.1_MUCL39482 | cds-NP_012190.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:218310-221147:- | gene-YIL075C_MUCL42920 | rna-NM_001179425.1_MUCL42920 | cds-NP_012190.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:217863-220700:- | gene-YIL075C_NCIM3186 | rna-NM_001179425.1_NCIM3186 | cds-NP_012190.1_NCIM3186 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:219226-222063:- | gene-YIL075C_NCYC1407 | rna-NM_001179425.1_NCYC1407 | cds-NP_012190.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:213208-216045:- | gene-YIL075C_PE2H3 | rna-NM_001179425.1_PE2H3 | cds-NP_012190.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:207925-210762:- | gene-YIL075C_PE2H4 | rna-NM_001179425.1_PE2H4 | cds-NP_012190.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:217863-220700:- | gene-YIL075C_S288C | rna-NM_001179425.1_S288C | cds-NP_012190.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000031.1:105134-107971:+ | gene-YIL075C_SA1 | rna-NM_001179425.1_SA1 | cds-NP_012190.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:214397-217234:- | gene-YIL075C_ThermosaccDry | rna-NM_001179425.1_ThermosaccDry | cds-NP_012190.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:212083-214920:- | gene-YIL075C_VR1 | rna-NM_001179425.1_VR1 | cds-NP_012190.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:188660-191497:- | gene-YIL075C_ZTW1 | rna-NM_001179425.1_ZTW1 | cds-NP_012190.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:212775-215612:- | gene-YIL075C_Sparadoxus | rna-NM_001179425.1_Sparadoxus | cds-NP_012190.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |