Gene name: RPN13
Reference locus (S288C): YLR421C
Gene biotype: protein_coding
Description: Subunit of the 19S regulatory particle of the 26S proteasome lid; acts as a ubiquitin receptor for the proteasome; null mutants accumulate ubiquitinated Gcn4p and display decreased 26S proteasome stability; protein abundance increases in response to DNA replication stress; Belongs to the RPN13 family
Top 10 interactors (score): RPN5 (0.999); RPT2 (0.999); RPN10 (0.999); RPT1 (0.999); RPN2 (0.999); SEM1 (0.999); RPN6 (0.999); RPN11 (0.999); PRE4 (0.999); RPT3 (0.999); PRE9 (0.999); RPT4 (0.999); PRE1 (0.999); PRE7 (0.999); PUP2 (0.999); PRE8 (0.999); RPN3 (0.999); PRE6 (0.999); RPT6 (0.999); PRE10 (0.999)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:908639-909109:- | gene-YLR421C_AKU4011 | rna-NM_001182309.3_AKU4011 | cds-NP_013525.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:140804-141274:- | gene-YLR421C_BG1 | rna-NM_001182309.3_BG1 | cds-NP_013525.3_BG1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:946942-947412:- | gene-YLR421C_Bruggeman | rna-NM_001182309.3_Bruggeman | cds-NP_013525.3_Bruggeman | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:942489-942959:- | gene-YLR421C_CAT1 | rna-NM_001182309.3_CAT1 | cds-NP_013525.3_CAT1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:944236-944706:- | gene-YLR421C_CBS1585 | rna-NM_001182309.3_CBS1585 | cds-NP_013525.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:927893-928363:- | gene-YLR421C_CBS436 | rna-NM_001182309.3_CBS436 | cds-NP_013525.3_CBS436 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:980276-980746:- | gene-YLR421C_CBS6412 | rna-NM_001182309.3_CBS6412 | cds-NP_013525.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:944528-944998:- | gene-YLR421C_CBS6413 | rna-NM_001182309.3_CBS6413 | cds-NP_013525.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:944290-944760:- | gene-YLR421C_CENPK1137D | rna-NM_001182309.3_CENPK1137D | cds-NP_013525.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:901519-901989:- | gene-YLR421C_EthanolRed | rna-NM_001182309.3_EthanolRed | cds-NP_013525.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:931000-931470:- | gene-YLR421C_FaliES1 | rna-NM_001182309.3_FaliES1 | cds-NP_013525.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:83633-84103:- | gene-YLR421C_JAY291 | rna-NM_001182309.3_JAY291 | cds-NP_013525.3_JAY291 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:945805-946275:- | gene-YLR421C_MUCL30387 | rna-NM_001182309.3_MUCL30387 | cds-NP_013525.3_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:951908-952378:- | gene-YLR421C_MUCL30388 | rna-NM_001182309.3_MUCL30388 | cds-NP_013525.3_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:945456-945926:- | gene-YLR421C_MUCL39482 | rna-NM_001182309.3_MUCL39482 | cds-NP_013525.3_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:940113-940583:- | gene-YLR421C_MUCL42920 | rna-NM_001182309.3_MUCL42920 | cds-NP_013525.3_MUCL42920 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:965064-965534:- | gene-YLR421C_NCIM3186 | rna-NM_001182309.3_NCIM3186 | cds-NP_013525.3_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:954635-955105:- | gene-YLR421C_NCYC1407 | rna-NM_001182309.3_NCYC1407 | cds-NP_013525.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:941014-941484:- | gene-YLR421C_PE2H3 | rna-NM_001182309.3_PE2H3 | cds-NP_013525.3_PE2H3 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:940758-941228:- | gene-YLR421C_PE2H4 | rna-NM_001182309.3_PE2H4 | cds-NP_013525.3_PE2H4 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:965090-965560:- | gene-YLR421C_S288C | rna-NM_001182309.3_S288C | cds-NP_013525.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:89113-89583:+ | gene-YLR421C_SA1 | rna-NM_001182309.3_SA1 | cds-NP_013525.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:934079-934549:- | gene-YLR421C_ThermosaccDry | rna-NM_001182309.3_ThermosaccDry | cds-NP_013525.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:946456-946926:- | gene-YLR421C_VR1 | rna-NM_001182309.3_VR1 | cds-NP_013525.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:270292-270762:- | gene-YLR421C_ZTW1 | rna-NM_001182309.3_ZTW1 | cds-NP_013525.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:919491-919964:- | gene-YLR421C_Sparadoxus | rna-NM_001182309.3_Sparadoxus | cds-NP_013525.3_Sparadoxus | 89.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |