Gene name: RPN10
Reference locus (S288C): YHR200W
Gene biotype: protein_coding
Description: Non-ATPase base subunit of the 19S RP of the 26S proteasome; N-terminus plays a role in maintaining the structural integrity of the regulatory particle (RP); binds selectively to polyubiquitin chains; homolog of the mammalian S5a protein
Top 10 interactors (score): PRE5 (0.999); NAS6 (0.999); RPN1 (0.999); UBI4 (0.999); SCL1 (0.999); PRE10 (0.999); RPT6 (0.999); RPN3 (0.999); RPN13 (0.999); PRE8 (0.999); PRE7 (0.999); PUP3 (0.999); PRE1 (0.999); RPT4 (0.999); PRE4 (0.999); RPT3 (0.999); RPN6 (0.999); SEM1 (0.999); RPN2 (0.999); RPT1 (0.999)
Homologues (species, bitscore): PSMD4 (Homo sapiens, 231.1); Psmd4 (Mus musculus, 231.1); psmd4a (Danio rerio, 233.0); psmd4 (Xenopus tropicalis, 145.6); Rpn10 (Drosophila melanogaster, 197.2); rpn-10 (Caenorhabditis elegans, 171.8); RPN10 (Arabidopsis thaliana, 223.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:486153-486959:+ | gene-YHR200W_AKU4011 | rna-NM_001179331.3_AKU4011 | cds-NP_012070.3_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:30790-31596:- | gene-YHR200W_BG1 | rna-NM_001179331.3_BG1 | cds-NP_012070.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:493394-494200:+ | gene-YHR200W_Bruggeman | rna-NM_001179331.3_Bruggeman | cds-NP_012070.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:489677-490483:+ | gene-YHR200W_CAT1 | rna-NM_001179331.3_CAT1 | cds-NP_012070.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:485605-486411:+ | gene-YHR200W_CBS1585 | rna-NM_001179331.3_CBS1585 | cds-NP_012070.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:483549-484355:+ | gene-YHR200W_CBS436 | rna-NM_001179331.3_CBS436 | cds-NP_012070.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:485704-486510:+ | gene-YHR200W_CBS6412 | rna-NM_001179331.3_CBS6412 | cds-NP_012070.3_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:486995-487801:+ | gene-YHR200W_CBS6413 | rna-NM_001179331.3_CBS6413 | cds-NP_012070.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:492265-493071:+ | gene-YHR200W_CENPK1137D | rna-NM_001179331.3_CENPK1137D | cds-NP_012070.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:544691-545497:+ | gene-YHR200W_EthanolRed | rna-NM_001179331.3_EthanolRed | cds-NP_012070.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:487135-487941:+ | gene-YHR200W_FaliES1 | rna-NM_001179331.3_FaliES1 | cds-NP_012070.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000147.1:32295-33101:+ | gene-YHR200W_JAY291 | rna-NM_001179331.3_JAY291 | cds-NP_012070.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:494719-495525:+ | gene-YHR200W_MUCL30387 | rna-NM_001179331.3_MUCL30387 | cds-NP_012070.3_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:494143-494949:+ | gene-YHR200W_MUCL30388 | rna-NM_001179331.3_MUCL30388 | cds-NP_012070.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:485516-486322:+ | gene-YHR200W_MUCL39482 | rna-NM_001179331.3_MUCL39482 | cds-NP_012070.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:493461-494267:+ | gene-YHR200W_MUCL42920 | rna-NM_001179331.3_MUCL42920 | cds-NP_012070.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:498961-499767:+ | gene-YHR200W_NCIM3186 | rna-NM_001179331.3_NCIM3186 | cds-NP_012070.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:487979-488785:+ | gene-YHR200W_NCYC1407 | rna-NM_001179331.3_NCYC1407 | cds-NP_012070.3_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:487139-487945:+ | gene-YHR200W_PE2H3 | rna-NM_001179331.3_PE2H3 | cds-NP_012070.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:494566-495372:+ | gene-YHR200W_PE2H4 | rna-NM_001179331.3_PE2H4 | cds-NP_012070.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:499079-499885:+ | gene-YHR200W_S288C | rna-NM_001179331.3_S288C | cds-NP_012070.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000079.1:47219-48025:+ | gene-YHR200W_SA1 | rna-NM_001179331.3_SA1 | cds-NP_012070.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:488218-489024:+ | gene-YHR200W_ThermosaccDry | rna-NM_001179331.3_ThermosaccDry | cds-NP_012070.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:497441-498247:+ | gene-YHR200W_VR1 | rna-NM_001179331.3_VR1 | cds-NP_012070.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:478455-479261:+ | gene-YHR200W_ZTW1 | rna-NM_001179331.3_ZTW1 | cds-NP_012070.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:485149-485952:+ | gene-YHR200W_Sparadoxus | rna-NM_001179331.3_Sparadoxus | cds-NP_012070.3_Sparadoxus | 91.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |