Gene name: RPN1
Reference locus (S288C): YHR027C
Gene biotype: protein_coding
Description: Non-ATPase base subunit of the 19S RP of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein-protein interactions; RP is the acronym for regulatory particle
Top 10 interactors (score): NAS6 (0.999); PRE5 (0.999); RPT2 (0.999); SCL1 (0.999); PUP2 (0.999); PRE9 (0.999); RAD23 (0.999); PRE6 (0.999); RPN10 (0.999); RPN11 (0.999); PRE2 (0.999); RPN12 (0.999); RPN5 (0.999); RPN9 (0.999); RPT5 (0.999); RPN8 (0.999); PUP1 (0.999); UBP6 (0.999); PRE3 (0.999); RPN7 (0.999)
Homologues (species, bitscore): PSMD2 (Homo sapiens, 753.8); Psmd2 (Mus musculus, 756.5); psmd2 (Danio rerio, 434.1); psmd2 (Xenopus tropicalis, 757.3); Rpn1 (Drosophila melanogaster, 721.5); rpn-1 (Caenorhabditis elegans, 697.6); RPN1A (Arabidopsis thaliana, 686.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:149930-152911:- | gene-YHR027C_AKU4011 | rna-NM_001179157.1_AKU4011 | cds-NP_011892.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:70216-73197:- | gene-YHR027C_BG1 | rna-NM_001179157.1_BG1 | cds-NP_011892.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:157454-160435:- | gene-YHR027C_Bruggeman | rna-NM_001179157.1_Bruggeman | cds-NP_011892.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:151835-154816:- | gene-YHR027C_CAT1 | rna-NM_001179157.1_CAT1 | cds-NP_011892.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:150262-153243:- | gene-YHR027C_CBS1585 | rna-NM_001179157.1_CBS1585 | cds-NP_011892.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:144607-147588:- | gene-YHR027C_CBS436 | rna-NM_001179157.1_CBS436 | cds-NP_011892.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:149954-152935:- | gene-YHR027C_CBS6412 | rna-NM_001179157.1_CBS6412 | cds-NP_011892.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:150086-153067:- | gene-YHR027C_CBS6413 | rna-NM_001179157.1_CBS6413 | cds-NP_011892.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:154999-157980:- | gene-YHR027C_CENPK1137D | rna-NM_001179157.1_CENPK1137D | cds-NP_011892.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:149475-152456:- | gene-YHR027C_EthanolRed | rna-NM_001179157.1_EthanolRed | cds-NP_011892.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:150454-153435:- | gene-YHR027C_FaliES1 | rna-NM_001179157.1_FaliES1 | cds-NP_011892.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000273.1:28172-31153:+ | gene-YHR027C_JAY291 | rna-NM_001179157.1_JAY291 | cds-NP_011892.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:156523-159504:- | gene-YHR027C_MUCL30387 | rna-NM_001179157.1_MUCL30387 | cds-NP_011892.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:156995-159976:- | gene-YHR027C_MUCL30388 | rna-NM_001179157.1_MUCL30388 | cds-NP_011892.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:149289-152270:- | gene-YHR027C_MUCL39482 | rna-NM_001179157.1_MUCL39482 | cds-NP_011892.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:156066-159047:- | gene-YHR027C_MUCL42920 | rna-NM_001179157.1_MUCL42920 | cds-NP_011892.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:161612-164593:- | gene-YHR027C_NCIM3186 | rna-NM_001179157.1_NCIM3186 | cds-NP_011892.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:149201-152182:- | gene-YHR027C_NCYC1407 | rna-NM_001179157.1_NCYC1407 | cds-NP_011892.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:151612-154593:- | gene-YHR027C_PE2H3 | rna-NM_001179157.1_PE2H3 | cds-NP_011892.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:159053-162034:- | gene-YHR027C_PE2H4 | rna-NM_001179157.1_PE2H4 | cds-NP_011892.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:161730-164711:- | gene-YHR027C_S288C | rna-NM_001179157.1_S288C | cds-NP_011892.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000106.1:15277-18258:- | gene-YHR027C_SA1 | rna-NM_001179157.1_SA1 | cds-NP_011892.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:151543-154524:- | gene-YHR027C_ThermosaccDry | rna-NM_001179157.1_ThermosaccDry | cds-NP_011892.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:158083-161064:- | gene-YHR027C_VR1 | rna-NM_001179157.1_VR1 | cds-NP_011892.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:143134-146115:- | gene-YHR027C_ZTW1 | rna-NM_001179157.1_ZTW1 | cds-NP_011892.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:149270-152251:- | gene-YHR027C_Sparadoxus | rna-NM_001179157.1_Sparadoxus | cds-NP_011892.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |