Gene name: RPL7B
Reference locus (S288C): YPL198W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L7B; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7B has a paralog, RPL7A, that arose from the whole genome duplication
Top 10 interactors (score): RPS14A (0.999); RPS11B (0.999); RPL6B (0.999); RPL2B (0.999); RPS16A (0.999); RPL31A (0.999); RPS15 (0.999); RPL28 (0.999); RPS9B (0.999); RPL26A (0.999); RPS0B (0.999); RPS6B (0.999); RPS18B (0.999); RPL36A (0.999); RPL23B (0.999); RPL1B (0.999); RPL5 (0.999); RPS24B (0.999); RPS24A (0.999); RPS9A (0.999)
Homologues (species, bitscore): RPL7 (Homo sapiens, 249.6); Rpl7 (Mus musculus, 246.1); rpl7 (Danio rerio, 253.4); rpl7 (Xenopus tropicalis, 255.0); RpL7 (Drosophila melanogaster, 233.4); rpl-7 (Caenorhabditis elegans, 269.2); AT3G13580 (Arabidopsis thaliana, 274.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:151003-152553:+ | gene-YPL198W_AKU4011 | rna-NM_001184012.1_AKU4011 | cds-NP_015126.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:356791-358341:+ | gene-YPL198W_BG1 | rna-NM_001184012.1_BG1 | cds-NP_015126.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:176489-178228:+ | gene-YPL198W_Bruggeman | rna-NM_001184012.1_Bruggeman | cds-NP_015126.1_Bruggeman | 88.5 | 91.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:173093-174630:+ | gene-YPL198W_CAT1 | rna-NM_001184012.1_CAT1 | cds-NP_015126.1_CAT1 | 93.4 | 97.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:155191-156741:+ | gene-YPL198W_CBS1585 | rna-NM_001184012.1_CBS1585 | cds-NP_015126.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:169633-171170:+ | gene-YPL198W_CBS436 | rna-NM_001184012.1_CBS436 | cds-NP_015126.1_CBS436 | 93.4 | 97.2 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:159992-161542:+ | gene-YPL198W_CBS6412 | rna-NM_001184012.1_CBS6412 | cds-NP_015126.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:151364-152914:+ | gene-YPL198W_CBS6413 | rna-NM_001184012.1_CBS6413 | cds-NP_015126.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:173099-174649:+ | gene-YPL198W_CENPK1137D | rna-NM_001184012.1_CENPK1137D | cds-NP_015126.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:150122-151672:+ | gene-YPL198W_EthanolRed | rna-NM_001184012.1_EthanolRed | cds-NP_015126.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:157328-159043:+ | gene-YPL198W_FaliES1 | rna-NM_001184012.1_FaliES1 | cds-NP_015126.1_FaliES1 | 81.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:1-976:- | gene-YPL198W_JAY291 | rna-NM_001184012.1_JAY291 | cds-NP_015126.1_JAY291 | 21.7 | 21.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:168201-169924:+ | gene-YPL198W_MUCL30387 | rna-NM_001184012.1_MUCL30387 | cds-NP_015126.1_MUCL30387 | 81.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:166369-168079:+ | gene-YPL198W_MUCL30388 | rna-NM_001184012.1_MUCL30388 | cds-NP_015126.1_MUCL30388 | 81.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:148321-150070:+ | gene-YPL198W_MUCL39482 | rna-NM_001184012.1_MUCL39482 | cds-NP_015126.1_MUCL39482 | 78.7 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:167223-168743:+ | gene-YPL198W_MUCL42920 | rna-NM_001184012.1_MUCL42920 | cds-NP_015126.1_MUCL42920 | 74.5 | 89.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:173135-174685:+ | gene-YPL198W_NCIM3186 | rna-NM_001184012.1_NCIM3186 | cds-NP_015126.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:154768-156438:+ | gene-YPL198W_NCYC1407 | rna-NM_001184012.1_NCYC1407 | cds-NP_015126.1_NCYC1407 | 85.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:162503-164053:+ | gene-YPL198W_PE2H3 | rna-NM_001184012.1_PE2H3 | cds-NP_015126.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:162146-163696:+ | gene-YPL198W_PE2H4 | rna-NM_001184012.1_PE2H4 | cds-NP_015126.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:173152-174702:+ | gene-YPL198W_S288C | rna-NM_001184012.1_S288C | cds-NP_015126.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:1-1033:- | gene-YPL198W_SA1 | rna-NM_001184012.1_SA1 | cds-NP_015126.1_SA1 | 29.5 | 29.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:157109-158822:+ | gene-YPL198W_ThermosaccDry | rna-NM_001184012.1_ThermosaccDry | cds-NP_015126.1_ThermosaccDry | 81.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:172033-173568:+ | gene-YPL198W_VR1 | rna-NM_001184012.1_VR1 | cds-NP_015126.1_VR1 | 91.4 | 95.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:156627-158177:+ | gene-YPL198W_ZTW1 | rna-NM_001184012.1_ZTW1 | cds-NP_015126.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:158170-159736:+ | gene-YPL198W_Sparadoxus | rna-NM_001184012.1_Sparadoxus | cds-NP_015126.1_Sparadoxus | 93.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |