Gene name: RPL7A
Reference locus (S288C): YGL076C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L7A; required for processing of 27SA3 pre-rRNA to 27SB pre-rRNA during assembly of large ribosomal subunit; depletion leads to a turnover of pre-rRNA; contains a conserved C-terminal Nucleic acid Binding Domain (NDB2); binds to Domain II of 25S and 5.8S rRNAs; homologous to mammalian ribosomal protein L7 and bacterial L30; RPL7A has a paralog, RPL7B, that arose from the whole genome duplication
Top 10 interactors (score): RPL19A (0.999); RPS12 (0.999); RPL13B (0.999); RPS8A (0.999); RPS16B (0.999); RPS11A (0.999); RPS10A (0.999); RPL30 (0.999); RPS4B (0.999); RPL13A (0.999); RPL27B (0.999); RPL16A (0.999); RPS18A (0.999); RPL15A (0.999); RPL6A (0.999); RPL12A (0.999); RPS4A (0.999); RPL21B (0.999); RPS23A (0.999); RPL4B (0.999)
Homologues (species, bitscore): RPL7 (Homo sapiens, 250.4); Rpl7 (Mus musculus, 246.9); rpl7 (Danio rerio, 253.1); rpl7 (Xenopus tropicalis, 255.0); RpL7 (Drosophila melanogaster, 235.3); rpl-7 (Caenorhabditis elegans, 270.4); AT3G13580 (Arabidopsis thaliana, 276.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:367341-369009:- | gene-YGL076C_AKU4011 | rna-NM_001180941.1_AKU4011 | cds-NP_011439.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000132.1:36401-38062:+ | gene-YGL076C_BG1 | rna-NM_001180941.1_BG1 | cds-NP_011439.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:369824-371484:- | gene-YGL076C_Bruggeman | rna-NM_001180941.1_Bruggeman | cds-NP_011439.1_Bruggeman | 91.6 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:366738-368487:- | gene-YGL076C_CAT1 | rna-NM_001180941.1_CAT1 | cds-NP_011439.1_CAT1 | 89.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:370666-372554:- | gene-YGL076C_CBS1585 | rna-NM_001180941.1_CBS1585 | cds-NP_011439.1_CBS1585 | 76.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:364949-366679:- | gene-YGL076C_CBS436 | rna-NM_001180941.1_CBS436 | cds-NP_011439.1_CBS436 | 91.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:355046-356714:- | gene-YGL076C_CBS6412 | rna-NM_001180941.1_CBS6412 | cds-NP_011439.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:364970-366638:- | gene-YGL076C_CBS6413 | rna-NM_001180941.1_CBS6413 | cds-NP_011439.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:364524-366185:- | gene-YGL076C_CENPK1137D | rna-NM_001180941.1_CENPK1137D | cds-NP_011439.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:356413-358081:- | gene-YGL076C_EthanolRed | rna-NM_001180941.1_EthanolRed | cds-NP_011439.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:358974-360642:- | gene-YGL076C_FaliES1 | rna-NM_001180941.1_FaliES1 | cds-NP_011439.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000369.1:44677-46338:- | gene-YGL076C_JAY291 | rna-NM_001180941.1_JAY291 | cds-NP_011439.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:366801-368680:- | gene-YGL076C_MUCL30387 | rna-NM_001180941.1_MUCL30387 | cds-NP_011439.1_MUCL30387 | 76.9 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:369786-371447:- | gene-YGL076C_MUCL30388 | rna-NM_001180941.1_MUCL30388 | cds-NP_011439.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:367194-368862:- | gene-YGL076C_MUCL39482 | rna-NM_001180941.1_MUCL39482 | cds-NP_011439.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:205251-206912:+ | gene-YGL076C_MUCL42920 | rna-NM_001180941.1_MUCL42920 | cds-NP_011439.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:364335-365996:- | gene-YGL076C_NCIM3186 | rna-NM_001180941.1_NCIM3186 | cds-NP_011439.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:358729-360397:- | gene-YGL076C_NCYC1407 | rna-NM_001180941.1_NCYC1407 | cds-NP_011439.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:360377-362038:- | gene-YGL076C_PE2H3 | rna-NM_001180941.1_PE2H3 | cds-NP_011439.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:365427-367088:- | gene-YGL076C_PE2H4 | rna-NM_001180941.1_PE2H4 | cds-NP_011439.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:364335-365996:- | gene-YGL076C_S288C | rna-NM_001180941.1_S288C | cds-NP_011439.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000096.1:1-1144:- | gene-YGL076C_SA1 | rna-NM_001180941.1_SA1 | cds-NP_011439.1_SA1 | 29.5 | 29.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:359227-360895:- | gene-YGL076C_ThermosaccDry | rna-NM_001180941.1_ThermosaccDry | cds-NP_011439.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:469594-471263:- | gene-YGL076C_VR1 | rna-NM_001180941.1_VR1 | cds-NP_011439.1_VR1 | 91.9 | 97.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:356590-358258:- | gene-YGL076C_ZTW1 | rna-NM_001180941.1_ZTW1 | cds-NP_011439.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:362207-363877:- | gene-YGL076C_Sparadoxus | rna-NM_001180941.1_Sparadoxus | cds-NP_011439.1_Sparadoxus | 95.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |