Gene name: RPL6B
Reference locus (S288C): YLR448W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L6B; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6B has a paralog, RPL6A, that arose from the whole genome duplication
Top 10 interactors (score): RPL40A (0.999); RPL34A (0.999); RPL18B (0.999); RPL32 (0.999); RPL29 (0.999); RPL20B (0.999); RPS30A (0.999); RPL17B (0.999); RPS21B (0.999); RPS17B (0.999); RPL17A (0.999); RPS26A (0.999); RPL23A (0.999); RPS27A (0.999); RPS8B (0.999); RPL33A (0.999); RPP0 (0.999); RPL24A (0.999); RPL16B (0.999); RPS19A (0.999)
Homologues (species, bitscore): RPL6 (Homo sapiens, 145.6); Rpl6 (Mus musculus, 147.9); rpl6 (Danio rerio, 147.1); rpl6 (Xenopus tropicalis, 110.9); RpL6 (Drosophila melanogaster, 119.4); rpl-6 (Caenorhabditis elegans, 124.0); AT1G74060 (Arabidopsis thaliana, 191.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:967123-968038:+ | gene-YLR448W_AKU4011 | rna-NM_001182336.1_AKU4011 | cds-NP_013553.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:199569-200484:+ | gene-YLR448W_BG1 | rna-NM_001182336.1_BG1 | cds-NP_013553.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:1005434-1006349:+ | gene-YLR448W_Bruggeman | rna-NM_001182336.1_Bruggeman | cds-NP_013553.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:1001434-1002349:+ | gene-YLR448W_CAT1 | rna-NM_001182336.1_CAT1 | cds-NP_013553.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:1002713-1003628:+ | gene-YLR448W_CBS1585 | rna-NM_001182336.1_CBS1585 | cds-NP_013553.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:992057-992972:+ | gene-YLR448W_CBS436 | rna-NM_001182336.1_CBS436 | cds-NP_013553.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:1038760-1039675:+ | gene-YLR448W_CBS6412 | rna-NM_001182336.1_CBS6412 | cds-NP_013553.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:1003501-1004416:+ | gene-YLR448W_CBS6413 | rna-NM_001182336.1_CBS6413 | cds-NP_013553.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:1013461-1014375:+ | gene-YLR448W_CENPK1137D | rna-NM_001182336.1_CENPK1137D | cds-NP_013553.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:960145-961060:+ | gene-YLR448W_EthanolRed | rna-NM_001182336.1_EthanolRed | cds-NP_013553.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:995416-996331:+ | gene-YLR448W_FaliES1 | rna-NM_001182336.1_FaliES1 | cds-NP_013553.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000194.1:22343-23258:- | gene-YLR448W_JAY291 | rna-NM_001182336.1_JAY291 | cds-NP_013553.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:1004290-1005205:+ | gene-YLR448W_MUCL30387 | rna-NM_001182336.1_MUCL30387 | cds-NP_013553.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:1014124-1015039:+ | gene-YLR448W_MUCL30388 | rna-NM_001182336.1_MUCL30388 | cds-NP_013553.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:1003947-1004862:+ | gene-YLR448W_MUCL39482 | rna-NM_001182336.1_MUCL39482 | cds-NP_013553.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:1004415-1005330:+ | gene-YLR448W_MUCL42920 | rna-NM_001182336.1_MUCL42920 | cds-NP_013553.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:1028828-1029742:+ | gene-YLR448W_NCIM3186 | rna-NM_001182336.1_NCIM3186 | cds-NP_013553.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:1013366-1014281:+ | gene-YLR448W_NCYC1407 | rna-NM_001182336.1_NCYC1407 | cds-NP_013553.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:999837-1000752:+ | gene-YLR448W_PE2H3 | rna-NM_001182336.1_PE2H3 | cds-NP_013553.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:999581-1000496:+ | gene-YLR448W_PE2H4 | rna-NM_001182336.1_PE2H4 | cds-NP_013553.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:1028854-1029768:+ | gene-YLR448W_S288C | rna-NM_001182336.1_S288C | cds-NP_013553.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:30105-31020:- | gene-YLR448W_SA1 | rna-NM_001182336.1_SA1 | cds-NP_013553.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:998494-999409:+ | gene-YLR448W_ThermosaccDry | rna-NM_001182336.1_ThermosaccDry | cds-NP_013553.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:1004919-1005834:+ | gene-YLR448W_VR1 | rna-NM_001182336.1_VR1 | cds-NP_013553.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:328765-329679:+ | gene-YLR448W_ZTW1 | rna-NM_001182336.1_ZTW1 | cds-NP_013553.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:977752-978650:+ | gene-YLR448W_Sparadoxus | rna-NM_001182336.1_Sparadoxus | cds-NP_013553.1_Sparadoxus | 96.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |