Gene name: RPL6A
Reference locus (S288C): YML073C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L6A; N-terminally acetylated; binds 5.8S rRNA; homologous to mammalian ribosomal protein L6, no bacterial homolog; RPL6A has a paralog, RPL6B, that arose from the whole genome duplication
Top 10 interactors (score): RPS16B (0.999); RPL33B (0.999); RPL13B (0.999); RPS8A (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPL35A (0.999); RPL9B (0.999); RPL40B (0.999); RPL8B (0.999); RPL1A (0.999); RPL13A (0.999); RPL27B (0.999); RPS14B (0.999); RPS18A (0.999); RPL16A (0.999); RPL15A (0.999); RPL12A (0.999); RPP2B (0.999)
Homologues (species, bitscore): RPL6 (Homo sapiens, 145.6); Rpl6 (Mus musculus, 148.7); rpl6 (Danio rerio, 147.5); rpl6 (Xenopus tropicalis, 111.3); RpL6 (Drosophila melanogaster, 116.3); rpl-6 (Caenorhabditis elegans, 120.6); AT1G74060 (Arabidopsis thaliana, 190.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:116960-117905:- | gene-YML073C_AKU4011 | rna-NM_001182432.1_AKU4011 | cds-NP_013638.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:358215-359161:+ | gene-YML073C_BG1 | rna-NM_001182432.1_BG1 | cds-NP_013638.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:123120-124066:- | gene-YML073C_Bruggeman | rna-NM_001182432.1_Bruggeman | cds-NP_013638.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:124794-125740:- | gene-YML073C_CAT1 | rna-NM_001182432.1_CAT1 | cds-NP_013638.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:116969-117914:- | gene-YML073C_CBS1585 | rna-NM_001182432.1_CBS1585 | cds-NP_013638.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:122888-123834:- | gene-YML073C_CBS436 | rna-NM_001182432.1_CBS436 | cds-NP_013638.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:117677-118622:- | gene-YML073C_CBS6412 | rna-NM_001182432.1_CBS6412 | cds-NP_013638.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:116152-117097:- | gene-YML073C_CBS6413 | rna-NM_001182432.1_CBS6413 | cds-NP_013638.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:117949-118894:- | gene-YML073C_CENPK1137D | rna-NM_001182432.1_CENPK1137D | cds-NP_013638.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:117235-118180:- | gene-YML073C_EthanolRed | rna-NM_001182432.1_EthanolRed | cds-NP_013638.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:117742-118687:- | gene-YML073C_FaliES1 | rna-NM_001182432.1_FaliES1 | cds-NP_013638.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:38405-39351:+ | gene-YML073C_JAY291 | rna-NM_001182432.1_JAY291 | cds-NP_013638.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:121652-122597:- | gene-YML073C_MUCL30387 | rna-NM_001182432.1_MUCL30387 | cds-NP_013638.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:124790-125736:- | gene-YML073C_MUCL30388 | rna-NM_001182432.1_MUCL30388 | cds-NP_013638.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:116980-117925:- | gene-YML073C_MUCL39482 | rna-NM_001182432.1_MUCL39482 | cds-NP_013638.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:121713-122659:- | gene-YML073C_MUCL42920 | rna-NM_001182432.1_MUCL42920 | cds-NP_013638.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:123181-124126:- | gene-YML073C_NCIM3186 | rna-NM_001182432.1_NCIM3186 | cds-NP_013638.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:117775-118720:- | gene-YML073C_NCYC1407 | rna-NM_001182432.1_NCYC1407 | cds-NP_013638.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:123137-124082:- | gene-YML073C_PE2H3 | rna-NM_001182432.1_PE2H3 | cds-NP_013638.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:123065-124011:- | gene-YML073C_PE2H4 | rna-NM_001182432.1_PE2H4 | cds-NP_013638.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:123227-124172:- | gene-YML073C_S288C | rna-NM_001182432.1_S288C | cds-NP_013638.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:60073-61019:+ | gene-YML073C_SA1 | rna-NM_001182432.1_SA1 | cds-NP_013638.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:117034-117979:- | gene-YML073C_ThermosaccDry | rna-NM_001182432.1_ThermosaccDry | cds-NP_013638.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:121413-122359:- | gene-YML073C_VR1 | rna-NM_001182432.1_VR1 | cds-NP_013638.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:96569-97514:- | gene-YML073C_ZTW1 | rna-NM_001182432.1_ZTW1 | cds-NP_013638.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:127851-128799:- | gene-YML073C_Sparadoxus | rna-NM_001182432.1_Sparadoxus | cds-NP_013638.1_Sparadoxus | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |