Gene name: RPL5
Reference locus (S288C): YPL131W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L5; nascent Rpl5p is bound by specific chaperone Syo1p during translation; homologous to mammalian ribosomal protein L5 and bacterial L18; binds 5S rRNA and is required for 60S subunit assembly; Belongs to the universal ribosomal protein uL18 family
Top 10 interactors (score): RPL36A (0.999); RPS5 (0.999); RPL38 (0.999); RPL31B (0.999); RPL37A (0.999); RPS27B (0.999); RPL14A (0.999); RPL12B (0.999); RPL9A (0.999); RPS7A (0.999); RPS18B (0.999); RPL23B (0.999); RPL26B (0.999); RPL7B (0.999); RPL43B (0.999); RPS24A (0.999); RPS24B (0.999); RPS6B (0.999); RLP24 (0.999); RPS0B (0.999)
Homologues (species, bitscore): RPL5 (Homo sapiens, 305.8); Rpl5 (Mus musculus, 304.3); rpl5b (Danio rerio, 310.1); rpl5 (Xenopus tropicalis, 311.6); RpL5 (Drosophila melanogaster, 330.9); rpl-5 (Caenorhabditis elegans, 300.8); RPL5B (Arabidopsis thaliana, 321.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:280772-281665:+ | gene-YPL131W_AKU4011 | rna-NM_001183945.1_AKU4011 | cds-NP_015194.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:486461-487354:+ | gene-YPL131W_BG1 | rna-NM_001183945.1_BG1 | cds-NP_015194.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:306771-307664:+ | gene-YPL131W_Bruggeman | rna-NM_001183945.1_Bruggeman | cds-NP_015194.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:303445-304338:+ | gene-YPL131W_CAT1 | rna-NM_001183945.1_CAT1 | cds-NP_015194.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:284845-285738:+ | gene-YPL131W_CBS1585 | rna-NM_001183945.1_CBS1585 | cds-NP_015194.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:299511-300404:+ | gene-YPL131W_CBS436 | rna-NM_001183945.1_CBS436 | cds-NP_015194.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:289514-290407:+ | gene-YPL131W_CBS6412 | rna-NM_001183945.1_CBS6412 | cds-NP_015194.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:281481-282374:+ | gene-YPL131W_CBS6413 | rna-NM_001183945.1_CBS6413 | cds-NP_015194.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:303023-303916:+ | gene-YPL131W_CENPK1137D | rna-NM_001183945.1_CENPK1137D | cds-NP_015194.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:279460-280353:+ | gene-YPL131W_EthanolRed | rna-NM_001183945.1_EthanolRed | cds-NP_015194.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:287052-287945:+ | gene-YPL131W_FaliES1 | rna-NM_001183945.1_FaliES1 | cds-NP_015194.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:77901-78794:- | gene-YPL131W_JAY291 | rna-NM_001183945.1_JAY291 | cds-NP_015194.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:298015-298908:+ | gene-YPL131W_MUCL30387 | rna-NM_001183945.1_MUCL30387 | cds-NP_015194.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:296027-296920:+ | gene-YPL131W_MUCL30388 | rna-NM_001183945.1_MUCL30388 | cds-NP_015194.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:278174-279067:+ | gene-YPL131W_MUCL39482 | rna-NM_001183945.1_MUCL39482 | cds-NP_015194.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:335412-336305:+ | gene-YPL131W_MUCL42920 | rna-NM_001183945.1_MUCL42920 | cds-NP_015194.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:303104-303997:+ | gene-YPL131W_NCIM3186 | rna-NM_001183945.1_NCIM3186 | cds-NP_015194.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:284627-285520:+ | gene-YPL131W_NCYC1407 | rna-NM_001183945.1_NCYC1407 | cds-NP_015194.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:292088-292981:+ | gene-YPL131W_PE2H3 | rna-NM_001183945.1_PE2H3 | cds-NP_015194.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:291710-292603:+ | gene-YPL131W_PE2H4 | rna-NM_001183945.1_PE2H4 | cds-NP_015194.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:303121-304014:+ | gene-YPL131W_S288C | rna-NM_001183945.1_S288C | cds-NP_015194.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:69666-70559:- | gene-YPL131W_SA1 | rna-NM_001183945.1_SA1 | cds-NP_015194.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:286850-287743:+ | gene-YPL131W_ThermosaccDry | rna-NM_001183945.1_ThermosaccDry | cds-NP_015194.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:301830-302723:+ | gene-YPL131W_VR1 | rna-NM_001183945.1_VR1 | cds-NP_015194.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:286175-287068:+ | gene-YPL131W_ZTW1 | rna-NM_001183945.1_ZTW1 | cds-NP_015194.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:287876-288769:+ | gene-YPL131W_Sparadoxus | rna-NM_001183945.1_Sparadoxus | cds-NP_015194.1_Sparadoxus | 98.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |