Gene name: RPL4B
Reference locus (S288C): YDR012W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L4B; homologous to mammalian ribosomal protein L4 and bacterial L4; RPL4B has a paralog, RPL4A, that arose from the whole genome duplication
Top 10 interactors (score): RPS14A (0.999); RPL2B (0.999); RPL6B (0.999); RPL15B (0.999); EFT1 (0.999); RPL26A (0.999); RPL28 (0.999); RPS15 (0.999); RPS11B (0.999); RPP1A (0.999); RPS19B (0.999); RPS0B (0.999); RPS18B (0.999); RPL23B (0.999); RPS5 (0.999); RPL38 (0.999); RPL12B (0.999); RPL9A (0.999); RPS16A (0.999); RPL31A (0.999)
Homologues (species, bitscore): RPL4 (Homo sapiens, 425.2); Rpl4 (Mus musculus, 425.6); rpl4 (Danio rerio, 431.0); rpl4 (Xenopus tropicalis, 427.9); RpL4 (Drosophila melanogaster, 372.9); rpl-4 (Caenorhabditis elegans, 360.5); AT3G09630 (Arabidopsis thaliana, 395.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:457724-458812:+ | gene-YDR012W_AKU4011 | rna-NM_001180320.3_AKU4011 | cds-NP_010295.3_AKU4011 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:90933-92021:- | gene-YDR012W_BG1 | rna-NM_001180320.3_BG1 | cds-NP_010295.3_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:486025-487113:+ | gene-YDR012W_Bruggeman | rna-NM_001180320.3_Bruggeman | cds-NP_010295.3_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:471106-472167:+ | gene-YDR012W_CAT1 | rna-NM_001180320.3_CAT1 | cds-NP_010295.3_CAT1 | 93.0 | 96.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:454316-455403:+ | gene-YDR012W_CBS1585 | rna-NM_001180320.3_CBS1585 | cds-NP_010295.3_CBS1585 | 70.0 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:471383-472444:+ | gene-YDR012W_CBS436 | rna-NM_001180320.3_CBS436 | cds-NP_010295.3_CBS436 | 93.6 | 96.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000003.1:1-468:+ | gene-YDR012W_CBS6412 | rna-NM_001180320.3_CBS6412 | cds-NP_010295.3_CBS6412 | 42.5 | 42.9 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:473531-474592:+ | gene-YDR012W_CBS6413 | rna-NM_001180320.3_CBS6413 | cds-NP_010295.3_CBS6413 | 93.6 | 96.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:470716-471907:+ | gene-YDR012W_CENPK1137D | rna-NM_001180320.3_CENPK1137D | cds-NP_010295.3_CENPK1137D | 91.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:465935-466834:+ | gene-YDR012W_EthanolRed | rna-NM_001180320.3_EthanolRed | cds-NP_010295.3_EthanolRed | 53.0 | 82.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:472106-473193:+ | gene-YDR012W_FaliES1 | rna-NM_001180320.3_FaliES1 | cds-NP_010295.3_FaliES1 | 77.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:471606-472693:+ | gene-YDR012W_MUCL30387 | rna-NM_001180320.3_MUCL30387 | cds-NP_010295.3_MUCL30387 | 63.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:455685-456772:+ | gene-YDR012W_MUCL39482 | rna-NM_001180320.3_MUCL39482 | cds-NP_010295.3_MUCL39482 | 71.1 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:377417-378478:+ | gene-YDR012W_MUCL42920 | rna-NM_001180320.3_MUCL42920 | cds-NP_010295.3_MUCL42920 | 93.6 | 96.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:471776-472864:+ | gene-YDR012W_NCIM3186 | rna-NM_001180320.3_NCIM3186 | cds-NP_010295.3_NCIM3186 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:454911-455939:+ | gene-YDR012W_NCYC1407 | rna-NM_001180320.3_NCYC1407 | cds-NP_010295.3_NCYC1407 | 87.0 | 93.4 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:470248-471336:+ | gene-YDR012W_PE2H3 | rna-NM_001180320.3_PE2H3 | cds-NP_010295.3_PE2H3 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:469553-470641:+ | gene-YDR012W_PE2H4 | rna-NM_001180320.3_PE2H4 | cds-NP_010295.3_PE2H4 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:471853-472941:+ | gene-YDR012W_S288C | rna-NM_001180320.3_S288C | cds-NP_010295.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000218.1:1-1065:- | gene-YDR012W_SA1 | rna-NM_001180320.3_SA1 | cds-NP_010295.3_SA1 | 97.6 | 97.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:471585-472672:+ | gene-YDR012W_ThermosaccDry | rna-NM_001180320.3_ThermosaccDry | cds-NP_010295.3_ThermosaccDry | 66.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:476054-477287:+ | gene-YDR012W_VR1 | rna-NM_001180320.3_VR1 | cds-NP_010295.3_VR1 | 81.0 | 95.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:469479-470567:+ | gene-YDR012W_ZTW1 | rna-NM_001180320.3_ZTW1 | cds-NP_010295.3_ZTW1 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:309625-310713:+ | gene-YDR012W_Sparadoxus | rna-NM_001180320.3_Sparadoxus | cds-NP_010295.3_Sparadoxus | 96.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |