Gene name: RPL4A
Reference locus (S288C): YBR031W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L4A; N-terminally acetylated; homologous to mammalian ribosomal protein L4 and bacterial L4; RPL4A has a paralog, RPL4B, that arose from the whole genome duplication
Top 10 interactors (score): RPL11B (0.999); RPL29 (0.999); RPL16B (0.999); RPP0 (0.999); RPL24A (0.999); RPL33A (0.999); RPS8B (0.999); RPL14B (0.999); RPL27A (0.999); RPS26B (0.999); RPS6A (0.999); RPL3 (0.999); RPL32 (0.999); RPL34A (0.999); RPL18B (0.999); RPS26A (0.999); RPL23A (0.999); RPL17A (0.999); RPL40A (0.999); RPL20B (0.999)
Homologues (species, bitscore): RPL4 (Homo sapiens, 425.2); Rpl4 (Mus musculus, 425.6); rpl4 (Danio rerio, 431.0); rpl4 (Xenopus tropicalis, 428.3); RpL4 (Drosophila melanogaster, 372.5); rpl-4 (Caenorhabditis elegans, 360.5); AT3G09630 (Arabidopsis thaliana, 395.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:282601-283688:+ | gene-YBR031W_AKU4011 | rna-NM_001178379.1_AKU4011 | cds-NP_009587.1_AKU4011 | 63.0 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:272739-273827:+ | gene-YBR031W_BG1 | rna-NM_001178379.1_BG1 | cds-NP_009587.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:287017-288104:+ | gene-YBR031W_CAT1 | rna-NM_001178379.1_CAT1 | cds-NP_009587.1_CAT1 | 76.1 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:274921-275982:+ | gene-YBR031W_CBS1585 | rna-NM_001178379.1_CBS1585 | cds-NP_009587.1_CBS1585 | 93.5 | 96.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:282903-283990:+ | gene-YBR031W_CBS436 | rna-NM_001178379.1_CBS436 | cds-NP_009587.1_CBS436 | 75.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:373151-373867:+ | gene-YBR031W_CBS6412 | rna-NM_001178379.1_CBS6412 | cds-NP_009587.1_CBS6412 | 65.4 | 65.8 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:280011-281098:+ | gene-YBR031W_CBS6413 | rna-NM_001178379.1_CBS6413 | cds-NP_009587.1_CBS6413 | 73.5 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:409379-410465:+ | gene-YBR031W_EthanolRed | rna-NM_001178379.1_EthanolRed | cds-NP_009587.1_EthanolRed | 99.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:298064-299315:+ | gene-YBR031W_FaliES1 | rna-NM_001178379.1_FaliES1 | cds-NP_009587.1_FaliES1 | 73.8 | 92.1 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000441.1:32409-33497:- | gene-YBR031W_JAY291 | rna-NM_001178379.1_JAY291 | cds-NP_009587.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:284457-285481:+ | gene-YBR031W_MUCL30387 | rna-NM_001178379.1_MUCL30387 | cds-NP_009587.1_MUCL30387 | 86.9 | 93.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:284445-285506:+ | gene-YBR031W_MUCL30388 | rna-NM_001178379.1_MUCL30388 | cds-NP_009587.1_MUCL30388 | 92.1 | 96.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:274909-275970:+ | gene-YBR031W_MUCL39482 | rna-NM_001178379.1_MUCL39482 | cds-NP_009587.1_MUCL39482 | 93.4 | 96.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:282078-283165:+ | gene-YBR031W_MUCL42920 | rna-NM_001178379.1_MUCL42920 | cds-NP_009587.1_MUCL42920 | 64.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:299963-301051:+ | gene-YBR031W_NCIM3186 | rna-NM_001178379.1_NCIM3186 | cds-NP_009587.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:275796-276883:+ | gene-YBR031W_NCYC1407 | rna-NM_001178379.1_NCYC1407 | cds-NP_009587.1_NCYC1407 | 63.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:287966-289054:+ | gene-YBR031W_PE2H3 | rna-NM_001178379.1_PE2H3 | cds-NP_009587.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:285641-286729:+ | gene-YBR031W_PE2H4 | rna-NM_001178379.1_PE2H4 | cds-NP_009587.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:300166-301254:+ | gene-YBR031W_S288C | rna-NM_001178379.1_S288C | cds-NP_009587.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:297694-298755:+ | gene-YBR031W_ThermosaccDry | rna-NM_001178379.1_ThermosaccDry | cds-NP_009587.1_ThermosaccDry | 93.3 | 96.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:279319-280406:+ | gene-YBR031W_VR1 | rna-NM_001178379.1_VR1 | cds-NP_009587.1_VR1 | 75.7 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:273392-274480:+ | gene-YBR031W_ZTW1 | rna-NM_001178379.1_ZTW1 | cds-NP_009587.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:473653-474741:+ | gene-YBR031W_Sparadoxus | rna-NM_001178379.1_Sparadoxus | cds-NP_009587.1_Sparadoxus | 96.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |