Gene name: RPL43B
Reference locus (S288C): YJR094W-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L43B; homologous to mammalian ribosomal protein L37A, no bacterial homolog; RPL43B has a paralog, RPL43A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): RPL40B (0.999); RPL35A (0.999); RPL20A (0.999); RPS2 (0.999); RPS3 (0.999); RPS16B (0.999); RPL8B (0.999); RPL37B (0.999); RPL12A (0.999); RPS23A (0.999); RPL34B (0.999); RPS4A (0.999); RPL19A (0.999); RPS12 (0.999); RPS10A (0.999); RPS11A (0.999); RPS8A (0.999); RPL33B (0.999); RPL4B (0.999); RPL30 (0.999)
Homologues (species, bitscore): RPL37A (Homo sapiens, 126.7); Rpl37a (Mus musculus, 126.7); RPL37A (Danio rerio, 125.2); rpl37a (Xenopus tropicalis, 125.2); RpL37A (Drosophila melanogaster, 129.4); rpl-43 (Caenorhabditis elegans, 130.2); AT3G60245 (Arabidopsis thaliana, 129.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:579805-580358:+ | gene-YJR094W-A_AKU4011 | rna-NM_001181752.3_AKU4011 | cds-NP_012628.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:27215-27767:- | gene-YJR094W-A_BG1 | rna-NM_001181752.3_BG1 | cds-NP_012628.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:595539-596091:+ | gene-YJR094W-A_Bruggeman | rna-NM_001181752.3_Bruggeman | cds-NP_012628.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:597958-598512:+ | gene-YJR094W-A_CAT1 | rna-NM_001181752.3_CAT1 | cds-NP_012628.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:591869-592422:+ | gene-YJR094W-A_CBS1585 | rna-NM_001181752.3_CBS1585 | cds-NP_012628.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:609977-610529:+ | gene-YJR094W-A_CBS436 | rna-NM_001181752.3_CBS436 | cds-NP_012628.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:579016-579569:+ | gene-YJR094W-A_CBS6412 | rna-NM_001181752.3_CBS6412 | cds-NP_012628.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:581311-581864:+ | gene-YJR094W-A_CBS6413 | rna-NM_001181752.3_CBS6413 | cds-NP_012628.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:590628-591181:+ | gene-YJR094W-A_CENPK1137D | rna-NM_001181752.3_CENPK1137D | cds-NP_012628.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:584224-584777:+ | gene-YJR094W-A_EthanolRed | rna-NM_001181752.3_EthanolRed | cds-NP_012628.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:595690-596243:+ | gene-YJR094W-A_FaliES1 | rna-NM_001181752.3_FaliES1 | cds-NP_012628.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:93176-93729:- | gene-YJR094W-A_JAY291 | rna-NM_001181752.3_JAY291 | cds-NP_012628.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:593844-594396:+ | gene-YJR094W-A_MUCL30387 | rna-NM_001181752.3_MUCL30387 | cds-NP_012628.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:591154-591707:+ | gene-YJR094W-A_MUCL30388 | rna-NM_001181752.3_MUCL30388 | cds-NP_012628.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:585329-585882:+ | gene-YJR094W-A_MUCL39482 | rna-NM_001181752.3_MUCL39482 | cds-NP_012628.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:589584-590137:+ | gene-YJR094W-A_MUCL42920 | rna-NM_001181752.3_MUCL42920 | cds-NP_012628.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:608284-608837:+ | gene-YJR094W-A_NCIM3186 | rna-NM_001181752.3_NCIM3186 | cds-NP_012628.3_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:582895-583448:+ | gene-YJR094W-A_NCYC1407 | rna-NM_001181752.3_NCYC1407 | cds-NP_012628.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:600788-601341:+ | gene-YJR094W-A_PE2H3 | rna-NM_001181752.3_PE2H3 | cds-NP_012628.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:594477-595030:+ | gene-YJR094W-A_PE2H4 | rna-NM_001181752.3_PE2H4 | cds-NP_012628.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:608305-608858:+ | gene-YJR094W-A_S288C | rna-NM_001181752.3_S288C | cds-NP_012628.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:66876-67428:+ | gene-YJR094W-A_SA1 | rna-NM_001181752.3_SA1 | cds-NP_012628.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:589624-590177:+ | gene-YJR094W-A_ThermosaccDry | rna-NM_001181752.3_ThermosaccDry | cds-NP_012628.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:591750-592302:+ | gene-YJR094W-A_VR1 | rna-NM_001181752.3_VR1 | cds-NP_012628.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:568991-569543:+ | gene-YJR094W-A_ZTW1 | rna-NM_001181752.3_ZTW1 | cds-NP_012628.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:602477-603034:+ | gene-YJR094W-A_Sparadoxus | rna-NM_001181752.3_Sparadoxus | cds-NP_012628.3_Sparadoxus | 95.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |