Gene name: RPL43A
Reference locus (S288C): YPR043W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L43A; null mutation confers a dominant lethal phenotype; homologous to mammalian ribosomal protein L37A, no bacterial homolog; RPL43A has a paralog, RPL43B, that arose from the whole genome duplication
Top 10 interactors (score): RPL17A (0.999); RPS26A (0.999); RPL23A (0.999); RPS28B (0.999); RPL40A (0.999); RPL16B (0.999); RPL42B (0.999); RPS21B (0.999); RPS25A (0.999); RPL21A (0.999); RPS0A (0.999); RPL33A (0.999); RPL24B (0.999); RPL18A (0.999); RPS8B (0.999); RPS1A (0.999); RPS29A (0.999); RPS19A (0.999); RPP0 (0.999); RPL24A (0.999)
Homologues (species, bitscore): RPL37A (Homo sapiens, 126.7); Rpl37a (Mus musculus, 126.7); RPL37A (Danio rerio, 125.2); rpl37a (Xenopus tropicalis, 125.2); RpL37A (Drosophila melanogaster, 129.4); rpl-43 (Caenorhabditis elegans, 130.2); AT3G60245 (Arabidopsis thaliana, 129.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:625833-626514:+ | gene-YPR043W_AKU4011 | rna-NM_001184140.1_AKU4011 | cds-NP_015368.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:271153-271834:- | gene-YPR043W_BG1 | rna-NM_001184140.1_BG1 | cds-NP_015368.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:703498-704179:+ | gene-YPR043W_Bruggeman | rna-NM_001184140.1_Bruggeman | cds-NP_015368.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:746955-747636:+ | gene-YPR043W_CAT1 | rna-NM_001184140.1_CAT1 | cds-NP_015368.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:629518-630199:+ | gene-YPR043W_CBS1585 | rna-NM_001184140.1_CBS1585 | cds-NP_015368.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:643895-644576:+ | gene-YPR043W_CBS436 | rna-NM_001184140.1_CBS436 | cds-NP_015368.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:633266-633947:+ | gene-YPR043W_CBS6412 | rna-NM_001184140.1_CBS6412 | cds-NP_015368.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:626467-627148:+ | gene-YPR043W_CBS6413 | rna-NM_001184140.1_CBS6413 | cds-NP_015368.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:654135-654816:+ | gene-YPR043W_CENPK1137D | rna-NM_001184140.1_CENPK1137D | cds-NP_015368.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:953020-953701:+ | gene-YPR043W_EthanolRed | rna-NM_001184140.1_EthanolRed | cds-NP_015368.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:631659-632340:+ | gene-YPR043W_FaliES1 | rna-NM_001184140.1_FaliES1 | cds-NP_015368.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:3618-4299:+ | gene-YPR043W_JAY291 | rna-NM_001184140.1_JAY291 | cds-NP_015368.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:644760-645441:+ | gene-YPR043W_MUCL30387 | rna-NM_001184140.1_MUCL30387 | cds-NP_015368.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:643464-644145:+ | gene-YPR043W_MUCL30388 | rna-NM_001184140.1_MUCL30388 | cds-NP_015368.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:622775-623456:+ | gene-YPR043W_MUCL39482 | rna-NM_001184140.1_MUCL39482 | cds-NP_015368.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:685601-686282:+ | gene-YPR043W_MUCL42920 | rna-NM_001184140.1_MUCL42920 | cds-NP_015368.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:654149-654830:+ | gene-YPR043W_NCIM3186 | rna-NM_001184140.1_NCIM3186 | cds-NP_015368.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:630707-631386:+ | gene-YPR043W_NCYC1407 | rna-NM_001184140.1_NCYC1407 | cds-NP_015368.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:636921-637602:+ | gene-YPR043W_PE2H3 | rna-NM_001184140.1_PE2H3 | cds-NP_015368.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:636569-637250:+ | gene-YPR043W_PE2H4 | rna-NM_001184140.1_PE2H4 | cds-NP_015368.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:654166-654847:+ | gene-YPR043W_S288C | rna-NM_001184140.1_S288C | cds-NP_015368.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:45928-46609:- | gene-YPR043W_SA1 | rna-NM_001184140.1_SA1 | cds-NP_015368.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:631434-632115:+ | gene-YPR043W_ThermosaccDry | rna-NM_001184140.1_ThermosaccDry | cds-NP_015368.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:647593-648274:+ | gene-YPR043W_VR1 | rna-NM_001184140.1_VR1 | cds-NP_015368.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:630671-631352:+ | gene-YPR043W_ZTW1 | rna-NM_001184140.1_ZTW1 | cds-NP_015368.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:631460-632131:+ | gene-YPR043W_Sparadoxus | rna-NM_001184140.1_Sparadoxus | cds-NP_015368.1_Sparadoxus | 97.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |