Gene name: RPL42B
Reference locus (S288C): YHR141C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L42B; required for propagation of the killer toxin-encoding M1 double-stranded RNA satellite of the L-A double-stranded RNA virus; homologous to mammalian ribosomal protein L36A, no bacterial homolog; RPL42B has a paralog, RPL42A, that arose from the whole genome duplication
Top 10 interactors (score): RPS1B (0.999); RPS29B (0.999); RPL11B (0.999); RPL3 (0.999); RPL18B (0.999); RPL34A (0.999); RPP2A (0.999); RPL39 (0.999); RPL19B (0.999); RPL32 (0.999); RPL8A (0.999); RPS23B (0.999); RPS17A (0.999); RPL2A (0.999); RPS22A (0.999); RPS30B (0.999); RPL11A (0.999); RPS21A (0.999); RPS20 (0.999); RPS13 (0.999)
Homologues (species, bitscore): RPL36A (Homo sapiens, 158.3); Rpl36al (Mus musculus, 156.4); rpl36a (Danio rerio, 159.8); rpl36a (Xenopus tropicalis, 157.5); RpL36A (Drosophila melanogaster, 145.2); rpl-41 (Caenorhabditis elegans, 164.1); RPL36AA (Arabidopsis thaliana, 158.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:368898-369659:- | gene-YHR141C_AKU4011 | rna-NM_001179271.1_AKU4011 | cds-NP_012010.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:148177-148939:+ | gene-YHR141C_BG1 | rna-NM_001179271.1_BG1 | cds-NP_012010.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:376362-377123:- | gene-YHR141C_Bruggeman | rna-NM_001179271.1_Bruggeman | cds-NP_012010.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:371331-372093:- | gene-YHR141C_CAT1 | rna-NM_001179271.1_CAT1 | cds-NP_012010.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:367920-368681:- | gene-YHR141C_CBS1585 | rna-NM_001179271.1_CBS1585 | cds-NP_012010.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:365272-366034:- | gene-YHR141C_CBS436 | rna-NM_001179271.1_CBS436 | cds-NP_012010.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:369361-370122:- | gene-YHR141C_CBS6412 | rna-NM_001179271.1_CBS6412 | cds-NP_012010.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:368951-369712:- | gene-YHR141C_CBS6413 | rna-NM_001179271.1_CBS6413 | cds-NP_012010.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:375161-375922:- | gene-YHR141C_CENPK1137D | rna-NM_001179271.1_CENPK1137D | cds-NP_012010.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:427811-428572:- | gene-YHR141C_EthanolRed | rna-NM_001179271.1_EthanolRed | cds-NP_012010.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:369300-370061:- | gene-YHR141C_FaliES1 | rna-NM_001179271.1_FaliES1 | cds-NP_012010.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000440.1:1-494:- | gene-YHR141C_JAY291 | rna-NM_001179271.1_JAY291 | cds-NP_012010.1_JAY291 | 16.1 | 16.1 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:376117-376877:- | gene-YHR141C_MUCL30387 | rna-NM_001179271.1_MUCL30387 | cds-NP_012010.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:376125-376886:- | gene-YHR141C_MUCL30388 | rna-NM_001179271.1_MUCL30388 | cds-NP_012010.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:368265-369026:- | gene-YHR141C_MUCL39482 | rna-NM_001179271.1_MUCL39482 | cds-NP_012010.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:374479-375242:- | gene-YHR141C_MUCL42920 | rna-NM_001179271.1_MUCL42920 | cds-NP_012010.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:381872-382633:- | gene-YHR141C_NCIM3186 | rna-NM_001179271.1_NCIM3186 | cds-NP_012010.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:370473-371234:- | gene-YHR141C_NCYC1407 | rna-NM_001179271.1_NCYC1407 | cds-NP_012010.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:369930-370692:- | gene-YHR141C_PE2H3 | rna-NM_001179271.1_PE2H3 | cds-NP_012010.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:377357-378119:- | gene-YHR141C_PE2H4 | rna-NM_001179271.1_PE2H4 | cds-NP_012010.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:381990-382751:- | gene-YHR141C_S288C | rna-NM_001179271.1_S288C | cds-NP_012010.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000103.1:6651-7413:+ | gene-YHR141C_SA1 | rna-NM_001179271.1_SA1 | cds-NP_012010.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:370383-371144:- | gene-YHR141C_ThermosaccDry | rna-NM_001179271.1_ThermosaccDry | cds-NP_012010.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:378841-379603:- | gene-YHR141C_VR1 | rna-NM_001179271.1_VR1 | cds-NP_012010.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:361375-362136:- | gene-YHR141C_ZTW1 | rna-NM_001179271.1_ZTW1 | cds-NP_012010.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:367804-368563:- | gene-YHR141C_Sparadoxus | rna-NM_001179271.1_Sparadoxus | cds-NP_012010.1_Sparadoxus | 98.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |