Gene name: RPL42A
Reference locus (S288C): YNL162W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L42A; homologous to mammalian ribosomal protein L36A, no bacterial homolog; RPL42A has a paralog, RPL42B, that arose from the whole genome duplication
Top 10 interactors (score): RPS9B (0.999); RPL26A (0.999); RPS9A (0.999); RPL37B (0.999); RPL12A (0.999); RPS28A (0.999); RPL28 (0.999); RPS16A (0.999); RPL8B (0.999); RPS11B (0.999); RPS14A (0.999); RPS15 (0.999); RPL35A (0.999); RPL40B (0.999); RPL9B (0.999); RPS3 (0.999); RPS2 (0.999); RPL20A (0.999); RPS19B (0.999); RPL31A (0.999)
Homologues (species, bitscore): RPL36A (Homo sapiens, 158.3); Rpl36al (Mus musculus, 156.4); rpl36a (Danio rerio, 159.8); rpl36a (Xenopus tropicalis, 157.5); RpL36A (Drosophila melanogaster, 145.2); rpl-41 (Caenorhabditis elegans, 164.1); RPL36AA (Arabidopsis thaliana, 158.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:325052-325874:+ | gene-YNL162W_AKU4011 | rna-NM_001183000.1_AKU4011 | cds-NP_014237.2_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:229016-229846:+ | gene-YNL162W_BG1 | rna-NM_001183000.1_BG1 | cds-NP_014237.2_BG1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:335108-335939:+ | gene-YNL162W_Bruggeman | rna-NM_001183000.1_Bruggeman | cds-NP_014237.2_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:377985-378815:+ | gene-YNL162W_CAT1 | rna-NM_001183000.1_CAT1 | cds-NP_014237.2_CAT1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:325704-326526:+ | gene-YNL162W_CBS1585 | rna-NM_001183000.1_CBS1585 | cds-NP_014237.2_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:394023-394853:+ | gene-YNL162W_CBS436 | rna-NM_001183000.1_CBS436 | cds-NP_014237.2_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:321109-321931:+ | gene-YNL162W_CBS6412 | rna-NM_001183000.1_CBS6412 | cds-NP_014237.2_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:322137-322959:+ | gene-YNL162W_CBS6413 | rna-NM_001183000.1_CBS6413 | cds-NP_014237.2_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:325136-325968:+ | gene-YNL162W_CENPK1137D | rna-NM_001183000.1_CENPK1137D | cds-NP_014237.2_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:322025-322857:+ | gene-YNL162W_EthanolRed | rna-NM_001183000.1_EthanolRed | cds-NP_014237.2_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:317938-318770:+ | gene-YNL162W_FaliES1 | rna-NM_001183000.1_FaliES1 | cds-NP_014237.2_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000439.1:24908-25176:- | gene-YNL162W_JAY291 | rna-NM_001183000.1_JAY291 | cds-NP_014237.2_JAY291 | 83.8 | 83.8 | Mismatch | 1 | 1 | 0 | False | False | True | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:330928-331758:+ | gene-YNL162W_MUCL30387 | rna-NM_001183000.1_MUCL30387 | cds-NP_014237.2_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:365482-366313:+ | gene-YNL162W_MUCL30388 | rna-NM_001183000.1_MUCL30388 | cds-NP_014237.2_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:322943-323765:+ | gene-YNL162W_MUCL39482 | rna-NM_001183000.1_MUCL39482 | cds-NP_014237.2_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:325346-326168:+ | gene-YNL162W_MUCL42920 | rna-NM_001183000.1_MUCL42920 | cds-NP_014237.2_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:331291-332123:+ | gene-YNL162W_NCIM3186 | rna-NM_001183000.1_NCIM3186 | cds-NP_014237.2_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:325037-325859:+ | gene-YNL162W_NCYC1407 | rna-NM_001183000.1_NCYC1407 | cds-NP_014237.2_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:321994-322824:+ | gene-YNL162W_PE2H3 | rna-NM_001183000.1_PE2H3 | cds-NP_014237.2_PE2H3 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:321382-322212:+ | gene-YNL162W_PE2H4 | rna-NM_001183000.1_PE2H4 | cds-NP_014237.2_PE2H4 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:331322-332154:+ | gene-YNL162W_S288C | rna-NM_001183000.1_S288C | cds-NP_014237.2_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:81421-82251:- | gene-YNL162W_SA1 | rna-NM_001183000.1_SA1 | cds-NP_014237.2_SA1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:318795-319627:+ | gene-YNL162W_ThermosaccDry | rna-NM_001183000.1_ThermosaccDry | cds-NP_014237.2_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:337317-338147:+ | gene-YNL162W_VR1 | rna-NM_001183000.1_VR1 | cds-NP_014237.2_VR1 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:228618-229449:+ | gene-YNL162W_ZTW1 | rna-NM_001183000.1_ZTW1 | cds-NP_014237.2_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:329415-330241:+ | gene-YNL162W_Sparadoxus | rna-NM_001183000.1_Sparadoxus | cds-NP_014237.2_Sparadoxus | 98.1 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |