Gene name: RPL41B
Reference locus (S288C): YDL133C-A
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L41B; comprises only 25 amino acids; rpl41a rpl41b double null mutant is viable; homologous to mammalian ribosomal protein L41, no bacterial homolog; RPL41B has a paralog, RPL41A, that arose from the whole genome duplication
Top 10 interactors (score): RPL41A (0.973); RPS12 (0.903); RPS26A (0.899); RPS25A (0.891); RPL42B (0.891); RPL29 (0.889); RPL28 (0.876); RPL42A (0.865); RPS10A (0.865); RPS31 (0.865); RPS2 (0.865); RPL35A (0.865); RPS30B (0.862); RPL40A (0.846); RPS27B (0.846); RPP1A (0.846); RPS29A (0.846); RPL30 (0.846); RPL11B (0.846); RPL43B (0.842)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:206367-206444:- | gene-YDL133C-A_AKU4011 | rna-NM_001180194.1_AKU4011 | cds-NP_010148.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:343526-343603:+ | gene-YDL133C-A_BG1 | rna-NM_001180194.1_BG1 | cds-NP_010148.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:223036-223113:- | gene-YDL133C-A_Bruggeman | rna-NM_001180194.1_Bruggeman | cds-NP_010148.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:126631-126708:- | gene-YDL133C-A_CAT1 | rna-NM_001180194.1_CAT1 | cds-NP_010148.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:204630-204707:- | gene-YDL133C-A_CBS1585 | rna-NM_001180194.1_CBS1585 | cds-NP_010148.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:221297-221374:- | gene-YDL133C-A_CBS436 | rna-NM_001180194.1_CBS436 | cds-NP_010148.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:203434-203511:- | gene-YDL133C-A_CBS6412 | rna-NM_001180194.1_CBS6412 | cds-NP_010148.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:222792-222869:- | gene-YDL133C-A_CBS6413 | rna-NM_001180194.1_CBS6413 | cds-NP_010148.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:220374-220451:- | gene-YDL133C-A_CENPK1137D | rna-NM_001180194.1_CENPK1137D | cds-NP_010148.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:217398-217475:- | gene-YDL133C-A_EthanolRed | rna-NM_001180194.1_EthanolRed | cds-NP_010148.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:223119-223196:- | gene-YDL133C-A_FaliES1 | rna-NM_001180194.1_FaliES1 | cds-NP_010148.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000204.1:5907-5984:+ | gene-YDL133C-A_JAY291 | rna-NM_001180194.1_JAY291 | cds-NP_010148.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:221484-221561:- | gene-YDL133C-A_MUCL30387 | rna-NM_001180194.1_MUCL30387 | cds-NP_010148.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:212352-212429:- | gene-YDL133C-A_MUCL30388 | rna-NM_001180194.1_MUCL30388 | cds-NP_010148.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:205484-205561:- | gene-YDL133C-A_MUCL39482 | rna-NM_001180194.1_MUCL39482 | cds-NP_010148.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000146.1:6056-6133:+ | gene-YDL133C-A_MUCL42920 | rna-NM_001180194.1_MUCL42920 | cds-NP_010148.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:221647-221724:- | gene-YDL133C-A_NCIM3186 | rna-NM_001180194.1_NCIM3186 | cds-NP_010148.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:205765-205842:- | gene-YDL133C-A_NCYC1407 | rna-NM_001180194.1_NCYC1407 | cds-NP_010148.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:212527-212604:- | gene-YDL133C-A_PE2H3 | rna-NM_001180194.1_PE2H3 | cds-NP_010148.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:212531-212608:- | gene-YDL133C-A_PE2H4 | rna-NM_001180194.1_PE2H4 | cds-NP_010148.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:221724-221801:- | gene-YDL133C-A_S288C | rna-NM_001180194.1_S288C | cds-NP_010148.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:87291-87368:- | gene-YDL133C-A_SA1 | rna-NM_001180194.1_SA1 | cds-NP_010148.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:222880-222957:- | gene-YDL133C-A_ThermosaccDry | rna-NM_001180194.1_ThermosaccDry | cds-NP_010148.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:224502-224579:- | gene-YDL133C-A_VR1 | rna-NM_001180194.1_VR1 | cds-NP_010148.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:220808-220885:- | gene-YDL133C-A_ZTW1 | rna-NM_001180194.1_ZTW1 | cds-NP_010148.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:222895-222972:- | gene-YDL133C-A_Sparadoxus | rna-NM_001180194.1_Sparadoxus | cds-NP_010148.1_Sparadoxus | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |