Gene name: RPL41A
Reference locus (S288C): YDL184C
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L41A; comprises only 25 amino acids; rpl41a rpl41b double null mutant is viable; homologous to mammalian ribosomal protein L41, no bacterial homolog; RPL41A has a paralog, RPL41B, that arose from the whole genome duplication
Top 10 interactors (score): RPL41B (0.973); RPL38 (0.946); RPS30B (0.918); RPS10A (0.904); RPL11A (0.903); RPS31 (0.896); RPS29A (0.892); RPL42B (0.892); RPS28A (0.891); RPL11B (0.891); RPL42A (0.891); RPL35B (0.89); RPL25 (0.889); RPL30 (0.886); RPL39 (0.882); RPS25A (0.88); RPS12 (0.873); RPL10 (0.87); RPL33A (0.866); RPL31A (0.862)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:114406-114483:- | gene-YDL184C_AKU4011 | rna-NM_001180244.1_AKU4011 | cds-NP_010097.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:434731-434808:+ | gene-YDL184C_BG1 | rna-NM_001180244.1_BG1 | cds-NP_010097.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:130748-130825:- | gene-YDL184C_Bruggeman | rna-NM_001180244.1_Bruggeman | cds-NP_010097.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | MBWC01000334.1:2915-2992:- | gene-YDL184C_CAT1 | rna-NM_001180244.1_CAT1 | cds-NP_010097.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:112955-113032:- | gene-YDL184C_CBS1585 | rna-NM_001180244.1_CBS1585 | cds-NP_010097.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:129901-129978:- | gene-YDL184C_CBS436 | rna-NM_001180244.1_CBS436 | cds-NP_010097.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:112861-112938:- | gene-YDL184C_CBS6412 | rna-NM_001180244.1_CBS6412 | cds-NP_010097.1_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:130831-130908:- | gene-YDL184C_CBS6413 | rna-NM_001180244.1_CBS6413 | cds-NP_010097.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:129081-129158:- | gene-YDL184C_CENPK1137D | rna-NM_001180244.1_CENPK1137D | cds-NP_010097.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:126544-126621:- | gene-YDL184C_EthanolRed | rna-NM_001180244.1_EthanolRed | cds-NP_010097.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:131651-131728:- | gene-YDL184C_FaliES1 | rna-NM_001180244.1_FaliES1 | cds-NP_010097.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000316.1:3254-3331:+ | gene-YDL184C_JAY291 | rna-NM_001180244.1_JAY291 | cds-NP_010097.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:129013-129090:- | gene-YDL184C_MUCL30387 | rna-NM_001180244.1_MUCL30387 | cds-NP_010097.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:120909-120986:- | gene-YDL184C_MUCL30388 | rna-NM_001180244.1_MUCL30388 | cds-NP_010097.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:114085-114162:- | gene-YDL184C_MUCL39482 | rna-NM_001180244.1_MUCL39482 | cds-NP_010097.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:130169-130246:- | gene-YDL184C_MUCL42920 | rna-NM_001180244.1_MUCL42920 | cds-NP_010097.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:130330-130407:- | gene-YDL184C_NCIM3186 | rna-NM_001180244.1_NCIM3186 | cds-NP_010097.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:113737-113814:- | gene-YDL184C_NCYC1407 | rna-NM_001180244.1_NCYC1407 | cds-NP_010097.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:121282-121359:- | gene-YDL184C_PE2H3 | rna-NM_001180244.1_PE2H3 | cds-NP_010097.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:121286-121363:- | gene-YDL184C_PE2H4 | rna-NM_001180244.1_PE2H4 | cds-NP_010097.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:130407-130484:- | gene-YDL184C_S288C | rna-NM_001180244.1_S288C | cds-NP_010097.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000110.1:3381-3458:+ | gene-YDL184C_SA1 | rna-NM_001180244.1_SA1 | cds-NP_010097.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:131410-131487:- | gene-YDL184C_ThermosaccDry | rna-NM_001180244.1_ThermosaccDry | cds-NP_010097.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:131843-131920:- | gene-YDL184C_VR1 | rna-NM_001180244.1_VR1 | cds-NP_010097.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:129583-129660:- | gene-YDL184C_ZTW1 | rna-NM_001180244.1_ZTW1 | cds-NP_010097.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:131731-131808:- | gene-YDL184C_Sparadoxus | rna-NM_001180244.1_Sparadoxus | cds-NP_010097.1_Sparadoxus | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |