Gene name: RPL40B
Reference locus (S288C): YKR094C
Gene biotype: protein_coding
Description: Ubiquitin-ribosomal 60S subunit protein L40B fusion protein; cleaved to yield ubiquitin and ribosomal protein L40B; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40B has a paralog, RPL40A, that arose from the whole genome duplication
Top 10 interactors (score): RPL7A (0.999); ASC1 (0.999); RPL10 (0.999); RPL25 (0.999); RPS23B (0.999); RPS17A (0.999); RPL22A (0.999); RPS1B (0.999); RPS31 (0.999); RPS29A (0.999); RPL43A (0.999); RPL21A (0.999); RPS0A (0.999); RPL24B (0.999); RPL18A (0.999); RPS1A (0.999); RPS28B (0.999); RPL42B (0.999); RPS25A (0.999); RPL35B (0.999)
Homologues (species, bitscore): UBA52 (Homo sapiens, 240.0); Gm11808 (Mus musculus, 240.0); uba52 (Danio rerio, 239.6); uba52 (Xenopus tropicalis, 240.0); RpL40 (Drosophila melanogaster, 242.7); ubq-2 (Caenorhabditis elegans, 240.7); RPL40A (Arabidopsis thaliana, 239.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:603934-604688:- | gene-YKR094C_AKU4011 | rna-NM_001179884.3_AKU4011 | cds-NP_013020.3_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:39453-40207:+ | gene-YKR094C_BG1 | rna-NM_001179884.3_BG1 | cds-NP_013020.3_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:626546-627300:- | gene-YKR094C_Bruggeman | rna-NM_001179884.3_Bruggeman | cds-NP_013020.3_Bruggeman | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:623830-624585:- | gene-YKR094C_CAT1 | rna-NM_001179884.3_CAT1 | cds-NP_013020.3_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:616421-617176:- | gene-YKR094C_CBS1585 | rna-NM_001179884.3_CBS1585 | cds-NP_013020.3_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:614832-615586:- | gene-YKR094C_CBS436 | rna-NM_001179884.3_CBS436 | cds-NP_013020.3_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:599710-600465:- | gene-YKR094C_CBS6412 | rna-NM_001179884.3_CBS6412 | cds-NP_013020.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:616240-616995:- | gene-YKR094C_CBS6413 | rna-NM_001179884.3_CBS6413 | cds-NP_013020.3_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:617655-618410:- | gene-YKR094C_CENPK1137D | rna-NM_001179884.3_CENPK1137D | cds-NP_013020.3_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:613824-614579:- | gene-YKR094C_EthanolRed | rna-NM_001179884.3_EthanolRed | cds-NP_013020.3_EthanolRed | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:617720-618475:- | gene-YKR094C_FaliES1 | rna-NM_001179884.3_FaliES1 | cds-NP_013020.3_FaliES1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:26497-27251:+ | gene-YKR094C_JAY291 | rna-NM_001179884.3_JAY291 | cds-NP_013020.3_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:626063-626817:- | gene-YKR094C_MUCL30387 | rna-NM_001179884.3_MUCL30387 | cds-NP_013020.3_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:620373-621127:- | gene-YKR094C_MUCL30388 | rna-NM_001179884.3_MUCL30388 | cds-NP_013020.3_MUCL30388 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:615262-616017:- | gene-YKR094C_MUCL39482 | rna-NM_001179884.3_MUCL39482 | cds-NP_013020.3_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:621319-622073:- | gene-YKR094C_MUCL42920 | rna-NM_001179884.3_MUCL42920 | cds-NP_013020.3_MUCL42920 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:617985-618739:- | gene-YKR094C_NCIM3186 | rna-NM_001179884.3_NCIM3186 | cds-NP_013020.3_NCIM3186 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:615675-616429:- | gene-YKR094C_NCYC1407 | rna-NM_001179884.3_NCYC1407 | cds-NP_013020.3_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:640924-641678:- | gene-YKR094C_PE2H3 | rna-NM_001179884.3_PE2H3 | cds-NP_013020.3_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:625366-626120:- | gene-YKR094C_PE2H4 | rna-NM_001179884.3_PE2H4 | cds-NP_013020.3_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:617996-618750:- | gene-YKR094C_S288C | rna-NM_001179884.3_S288C | cds-NP_013020.3_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:63060-63815:+ | gene-YKR094C_SA1 | rna-NM_001179884.3_SA1 | cds-NP_013020.3_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:616966-617721:- | gene-YKR094C_ThermosaccDry | rna-NM_001179884.3_ThermosaccDry | cds-NP_013020.3_ThermosaccDry | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:616228-616982:- | gene-YKR094C_VR1 | rna-NM_001179884.3_VR1 | cds-NP_013020.3_VR1 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:613933-614688:- | gene-YKR094C_ZTW1 | rna-NM_001179884.3_ZTW1 | cds-NP_013020.3_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:639305-640058:- | gene-YKR094C_Sparadoxus | rna-NM_001179884.3_Sparadoxus | cds-NP_013020.3_Sparadoxus | 96.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |