Gene name: RPL40A
Reference locus (S288C): YIL148W
Gene biotype: protein_coding
Description: Ubiquitin-ribosomal 60S subunit protein L40A fusion protein; cleaved to yield ubiquitin and ribosomal protein L40A; ubiquitin may facilitate assembly of the ribosomal protein into ribosomes; homologous to mammalian ribosomal protein L40, no bacterial homolog; RPL40A has a paralog, RPL40B, that arose from the whole genome duplication; relative distribution to the nucleus increases upon DNA replication stress
Top 10 interactors (score): RPS27B (0.999); RPS12 (0.999); RPL19A (0.999); RPL14A (0.999); RPS10A (0.999); RPS11A (0.999); RPS7A (0.999); RPL9A (0.999); RPL12B (0.999); RPS8A (0.999); RPL13B (0.999); RPS16B (0.999); RPL38 (0.999); RPL34B (0.999); RPS18B (0.999); RPS23A (0.999); RPS4B (0.999); RPL30 (0.999); RPS5 (0.999); RPL37A (0.999)
Homologues (species, bitscore): UBA52 (Homo sapiens, 240.0); Gm11808 (Mus musculus, 240.0); uba52 (Danio rerio, 239.6); uba52 (Xenopus tropicalis, 240.0); RpL40 (Drosophila melanogaster, 242.7); ubq-2 (Caenorhabditis elegans, 240.7); RPL40A (Arabidopsis thaliana, 239.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:69929-70748:+ | gene-YIL148W_AKU4011 | rna-NM_001179496.1_AKU4011 | cds-NP_012118.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:66611-67432:- | gene-YIL148W_BG1 | rna-NM_001179496.1_BG1 | cds-NP_012118.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:72690-73510:+ | gene-YIL148W_Bruggeman | rna-NM_001179496.1_Bruggeman | cds-NP_012118.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:66497-67317:+ | gene-YIL148W_CAT1 | rna-NM_001179496.1_CAT1 | cds-NP_012118.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:70132-70951:+ | gene-YIL148W_CBS1585 | rna-NM_001179496.1_CBS1585 | cds-NP_012118.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:61274-62095:+ | gene-YIL148W_CBS436 | rna-NM_001179496.1_CBS436 | cds-NP_012118.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:67661-68480:+ | gene-YIL148W_CBS6412 | rna-NM_001179496.1_CBS6412 | cds-NP_012118.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:61816-62635:+ | gene-YIL148W_CBS6413 | rna-NM_001179496.1_CBS6413 | cds-NP_012118.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:60413-61233:+ | gene-YIL148W_CENPK1137D | rna-NM_001179496.1_CENPK1137D | cds-NP_012118.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:55462-56282:+ | gene-YIL148W_EthanolRed | rna-NM_001179496.1_EthanolRed | cds-NP_012118.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:71265-72085:+ | gene-YIL148W_FaliES1 | rna-NM_001179496.1_FaliES1 | cds-NP_012118.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:36269-37089:- | gene-YIL148W_JAY291 | rna-NM_001179496.1_JAY291 | cds-NP_012118.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:70446-71266:+ | gene-YIL148W_MUCL30387 | rna-NM_001179496.1_MUCL30387 | cds-NP_012118.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:69694-70514:+ | gene-YIL148W_MUCL30388 | rna-NM_001179496.1_MUCL30388 | cds-NP_012118.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:71057-71876:+ | gene-YIL148W_MUCL39482 | rna-NM_001179496.1_MUCL39482 | cds-NP_012118.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:74258-75077:+ | gene-YIL148W_MUCL42920 | rna-NM_001179496.1_MUCL42920 | cds-NP_012118.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:68708-69528:+ | gene-YIL148W_NCIM3186 | rna-NM_001179496.1_NCIM3186 | cds-NP_012118.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:75022-75841:+ | gene-YIL148W_NCYC1407 | rna-NM_001179496.1_NCYC1407 | cds-NP_012118.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:69642-70462:+ | gene-YIL148W_PE2H3 | rna-NM_001179496.1_PE2H3 | cds-NP_012118.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:63604-64424:+ | gene-YIL148W_PE2H4 | rna-NM_001179496.1_PE2H4 | cds-NP_012118.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:68708-69528:+ | gene-YIL148W_S288C | rna-NM_001179496.1_S288C | cds-NP_012118.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:47285-48104:+ | gene-YIL148W_SA1 | rna-NM_001179496.1_SA1 | cds-NP_012118.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:69875-70695:+ | gene-YIL148W_ThermosaccDry | rna-NM_001179496.1_ThermosaccDry | cds-NP_012118.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:67033-67854:+ | gene-YIL148W_VR1 | rna-NM_001179496.1_VR1 | cds-NP_012118.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:44860-45679:+ | gene-YIL148W_ZTW1 | rna-NM_001179496.1_ZTW1 | cds-NP_012118.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:62602-63461:+ | gene-YIL148W_Sparadoxus | rna-NM_001179496.1_Sparadoxus | cds-NP_012118.1_Sparadoxus | 98.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |