Gene name: RPL39
Reference locus (S288C): YJL189W
Gene biotype: protein_coding
Description: Ribosomal 60S subunit protein L39; required for ribosome biogenesis; loss of both Rpl31p and Rpl39p confers lethality; also exhibits genetic interactions with SIS1 and PAB1; homologous to mammalian ribosomal protein L39, no bacterial homolog
Top 10 interactors (score): RPL8A (0.999); RPS1B (0.999); RPL22A (0.999); RPL25 (0.999); ASC1 (0.999); RPL21A (0.999); RPP1B (0.999); RPS0A (0.999); RPL24B (0.999); RPL18A (0.999); RPS1A (0.999); RPS29A (0.999); RPL43A (0.999); RPL35B (0.999); RPL10 (0.999); RPS31 (0.999); RPL7A (0.999); RPS28B (0.999); RPL42B (0.999); RPS25A (0.999)
Homologues (species, bitscore): RPL39 (Homo sapiens, 73.2); Rpl39 (Mus musculus, 73.2); rpl39 (Danio rerio, 73.9); rpl39 (Xenopus tropicalis, 72.0); RpL39 (Drosophila melanogaster, 81.6); rpl-39 (Caenorhabditis elegans, 68.9); AT4G31985 (Arabidopsis thaliana, 74.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:64330-64871:+ | gene-YJL189W_AKU4011 | rna-NM_001181622.1_AKU4011 | cds-NP_012346.1_AKU4011 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:41613-42154:+ | gene-YJL189W_BG1 | rna-NM_001181622.1_BG1 | cds-NP_012346.1_BG1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:76149-76690:+ | gene-YJL189W_Bruggeman | rna-NM_001181622.1_Bruggeman | cds-NP_012346.1_Bruggeman | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:79354-79895:+ | gene-YJL189W_CAT1 | rna-NM_001181622.1_CAT1 | cds-NP_012346.1_CAT1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:69965-70506:+ | gene-YJL189W_CBS1585 | rna-NM_001181622.1_CBS1585 | cds-NP_012346.1_CBS1585 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:94716-95257:+ | gene-YJL189W_CBS436 | rna-NM_001181622.1_CBS436 | cds-NP_012346.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:66447-66988:+ | gene-YJL189W_CBS6412 | rna-NM_001181622.1_CBS6412 | cds-NP_012346.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:67440-67981:+ | gene-YJL189W_CBS6413 | rna-NM_001181622.1_CBS6413 | cds-NP_012346.1_CBS6413 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:58399-58940:+ | gene-YJL189W_CENPK1137D | rna-NM_001181622.1_CENPK1137D | cds-NP_012346.1_CENPK1137D | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:68628-69169:+ | gene-YJL189W_EthanolRed | rna-NM_001181622.1_EthanolRed | cds-NP_012346.1_EthanolRed | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:73908-74449:+ | gene-YJL189W_FaliES1 | rna-NM_001181622.1_FaliES1 | cds-NP_012346.1_FaliES1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000164.1:44299-44840:- | gene-YJL189W_JAY291 | rna-NM_001181622.1_JAY291 | cds-NP_012346.1_JAY291 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:77877-78418:+ | gene-YJL189W_MUCL30387 | rna-NM_001181622.1_MUCL30387 | cds-NP_012346.1_MUCL30387 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:74038-74579:+ | gene-YJL189W_MUCL30388 | rna-NM_001181622.1_MUCL30388 | cds-NP_012346.1_MUCL30388 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:68707-69248:+ | gene-YJL189W_MUCL39482 | rna-NM_001181622.1_MUCL39482 | cds-NP_012346.1_MUCL39482 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:73309-73850:+ | gene-YJL189W_MUCL42920 | rna-NM_001181622.1_MUCL42920 | cds-NP_012346.1_MUCL42920 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:75912-76453:+ | gene-YJL189W_NCIM3186 | rna-NM_001181622.1_NCIM3186 | cds-NP_012346.1_NCIM3186 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:67318-67859:+ | gene-YJL189W_NCYC1407 | rna-NM_001181622.1_NCYC1407 | cds-NP_012346.1_NCYC1407 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:80013-80554:+ | gene-YJL189W_PE2H3 | rna-NM_001181622.1_PE2H3 | cds-NP_012346.1_PE2H3 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:79652-80193:+ | gene-YJL189W_PE2H4 | rna-NM_001181622.1_PE2H4 | cds-NP_012346.1_PE2H4 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:75933-76474:+ | gene-YJL189W_S288C | rna-NM_001181622.1_S288C | cds-NP_012346.1_S288C | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:77408-77949:- | gene-YJL189W_SA1 | rna-NM_001181622.1_SA1 | cds-NP_012346.1_SA1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:67100-67641:+ | gene-YJL189W_ThermosaccDry | rna-NM_001181622.1_ThermosaccDry | cds-NP_012346.1_ThermosaccDry | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:73971-74512:+ | gene-YJL189W_VR1 | rna-NM_001181622.1_VR1 | cds-NP_012346.1_VR1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:54684-55225:+ | gene-YJL189W_ZTW1 | rna-NM_001181622.1_ZTW1 | cds-NP_012346.1_ZTW1 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:79036-79609:+ | gene-YJL189W_Sparadoxus | rna-NM_001181622.1_Sparadoxus | cds-NP_012346.1_Sparadoxus | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |